Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 AC087516.1-201ENST00000561236 2428 ntBASIC5.72□□□□□ -1.49
SOX3P41225 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX3P41225 MIR433-201ENST00000384837 93 ntBASIC5.72□□□□□ -1.49
SOX3P41225 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 AC115283.1-201ENST00000427353 400 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX3P41225 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX3P41225 AC016908.1-201ENST00000442571 1219 ntBASIC5.72□□□□□ -1.49
SOX3P41225 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.72□□□□□ -1.49
SOX3P41225 PPIAP7-201ENST00000454070 489 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AL445687.2-201ENST00000458156 728 ntBASIC5.72□□□□□ -1.49
SOX3P41225 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX3P41225 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX3P41225 SNORA81.2-201ENST00000516868 170 ntBASIC5.72□□□□□ -1.49
SOX3P41225 IGKV2-19-201ENST00000518132 283 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX3P41225 AP000620.1-201ENST00000527147 504 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX3P41225 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.72□□□□□ -1.49
SOX3P41225 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX3P41225 AC084033.1-201ENST00000550830 633 ntBASIC5.72□□□□□ -1.49
SOX3P41225 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 AC027229.1-201ENST00000583887 253 ntBASIC5.72□□□□□ -1.49
SOX3P41225 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.72□□□□□ -1.49
SOX3P41225 AC073333.2-201ENST00000603589 769 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AC009237.12-201ENST00000604755 742 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AL021368.3-201ENST00000607119 578 ntBASIC5.72□□□□□ -1.49
SOX3P41225 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.72□□□□□ -1.49
SOX3P41225 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.72□□□□□ -1.49
SOX3P41225 PCA3_2.1-201ENST00000612507 409 ntBASIC5.72□□□□□ -1.49
SOX3P41225 RN7SL261P-201ENST00000613441 282 ntBASIC5.72□□□□□ -1.49
SOX3P41225 AL512652.1-201ENST00000619006 500 ntBASIC5.72□□□□□ -1.49
SOX3P41225 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SOX3P41225 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.72□□□□□ -1.49
SOX3P41225 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SOX3P41225 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
SOX3P41225 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.71□□□□□ -1.49
SOX3P41225 MSL3P1-202ENST00000440028 1468 ntBASIC5.71□□□□□ -1.49
SOX3P41225 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SOX3P41225 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.71□□□□□ -1.49
SOX3P41225 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.71□□□□□ -1.49
SOX3P41225 HSPD1P9-201ENST00000420325 1636 ntBASIC5.71□□□□□ -1.5
SOX3P41225 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 SNORA43.1-201ENST00000364863 140 ntBASIC5.71□□□□□ -1.5
SOX3P41225 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 AL121835.1-201ENST00000404250 354 ntBASIC5.71□□□□□ -1.5
SOX3P41225 SNORA81-201ENST00000408493 178 ntBASIC5.71□□□□□ -1.5
SOX3P41225 SNORA77.2-201ENST00000408571 112 ntBASIC5.71□□□□□ -1.5
SOX3P41225 RN7SKP240-201ENST00000410583 375 ntBASIC5.71□□□□□ -1.5
SOX3P41225 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.71□□□□□ -1.5
SOX3P41225 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.71□□□□□ -1.5
SOX3P41225 AC130360.1-201ENST00000425489 1117 ntBASIC5.71□□□□□ -1.5
SOX3P41225 AC244033.1-201ENST00000426826 870 ntBASIC5.71□□□□□ -1.5
SOX3P41225 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 AC110602.1-201ENST00000437414 318 ntBASIC5.71□□□□□ -1.5
SOX3P41225 RPL6P30-201ENST00000443382 862 ntBASIC5.71□□□□□ -1.5
SOX3P41225 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 AC097463.1-201ENST00000447288 481 ntBASIC5.71□□□□□ -1.5
SOX3P41225 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.71□□□□□ -1.5
SOX3P41225 AC090958.1-201ENST00000511122 351 ntBASIC5.71□□□□□ -1.5
SOX3P41225 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 RNA5SP400-201ENST00000517155 111 ntBASIC5.71□□□□□ -1.5
SOX3P41225 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.71□□□□□ -1.5
SOX3P41225 AC130365.2-201ENST00000525882 1201 ntBASIC5.71□□□□□ -1.5
SOX3P41225 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SOX3P41225 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.71□□□□□ -1.5
SOX3P41225 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 OR7A8P-201ENST00000595427 913 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms