Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OR51A1P-201ENST00000511110 946 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 AL049872.1-201ENST00000556323 322 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 NOP10-202ENST00000557912 436 ntTSL 2 BASIC7.07□□□□□ -1.28
SCN4AP35499 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC7.07□□□□□ -1.28
SCN4AP35499 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 OR52B5P-202ENST00000641118 1110 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC7.07□□□□□ -1.28
SCN4AP35499 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 AL359091.1-201ENST00000449048 1734 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 SRRM1P3-201ENST00000426911 2678 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
SCN4AP35499 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 AC112255.1-201ENST00000624070 2493 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 RNA5SP350-201ENST00000363298 111 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 MRPL53P1-201ENST00000414323 319 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AL133173.1-201ENST00000423458 397 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 IGKV1OR22-5-201ENST00000458718 354 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 RPL7P39-201ENST00000481157 744 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AC095057.1-201ENST00000507583 168 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 ST13P12-201ENST00000508958 1094 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.06□□□□□ -1.28
SCN4AP35499 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 IGLV3-30-201ENST00000524362 298 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.06□□□□□ -1.28
SCN4AP35499 ELOCP28-201ENST00000590044 317 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.06□□□□□ -1.28
SCN4AP35499 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 AC087269.2-201ENST00000641764 975 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
SCN4AP35499 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
SCN4AP35499 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
SCN4AP35499 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.06□□□□□ -1.28
SCN4AP35499 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 RAB28P1-201ENST00000411517 641 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.06□□□□□ -1.28
SCN4AP35499 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.06□□□□□ -1.28
SCN4AP35499 FABP5P2-201ENST00000439042 408 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 BX284632.1-201ENST00000478218 541 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7.06□□□□□ -1.28
SCN4AP35499 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.06□□□□□ -1.28
SCN4AP35499 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.06□□□□□ -1.28
SCN4AP35499 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.06□□□□□ -1.28
SCN4AP35499 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.06□□□□□ -1.28
SCN4AP35499 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.06□□□□□ -1.28
SCN4AP35499 AL731566.2-201ENST00000618971 317 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 AL390318.1-201ENST00000624564 687 ntBASIC7.06□□□□□ -1.28
SCN4AP35499 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCN4AP35499 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 MFSD8-218ENST00000641186 4448 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 OR2M1P-201ENST00000318104 951 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.05□□□□□ -1.28
SCN4AP35499 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.05□□□□□ -1.28
SCN4AP35499 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SCN4AP35499 RN7SKP166-201ENST00000410812 305 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 SLC35E1P1-201ENST00000419313 864 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.05□□□□□ -1.28
SCN4AP35499 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.05□□□□□ -1.28
SCN4AP35499 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 AC022832.1-201ENST00000530718 645 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 GSTP1P1-201ENST00000548078 319 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 HNRNPCP1-201ENST00000556181 766 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 AC119403.2-201ENST00000590960 598 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 PPATP2-201ENST00000605635 508 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 AC100827.5-201ENST00000615883 426 ntBASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms