Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 AP004289.1-201ENST00000436307 2205 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.5□□□□□ -1.53
LMX1BO60663 OR11H13P-201ENST00000359695 979 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 MRPS6P2-201ENST00000381143 370 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 MIR188-201ENST00000385034 86 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC005522.1-201ENST00000395416 346 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AL136116.2-201ENST00000404020 785 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 MTND2P15-201ENST00000418575 892 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 NAP1L4P2-201ENST00000425958 899 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC106800.3-201ENST00000511389 308 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 COX6B1P4-201ENST00000519826 484 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC009879.1-201ENST00000520029 839 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 AP004609.2-201ENST00000532177 190 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC025423.2-201ENST00000537570 439 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.5□□□□□ -1.53
LMX1BO60663 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 RPL3P13-201ENST00000550415 216 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 TPRX1P1-201ENST00000557620 319 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC002519.2-203ENST00000567043 837 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 AL138895.2-201ENST00000603019 178 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AL021368.3-201ENST00000607119 578 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AL135999.3-201ENST00000610501 812 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 MIR6862-1-201ENST00000613016 70 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 MIR6862-2-201ENST00000614755 70 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 LINC02495-203ENST00000636704 242 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.5□□□□□ -1.53
LMX1BO60663 AL121768.1-201ENST00000613917 2544 ntBASIC5.5□□□□□ -1.53
LMX1BO60663 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.5□□□□□ -1.53
LMX1BO60663 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 MTND5P12-201ENST00000502851 1449 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC005702.3-201ENST00000585345 1447 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC009831.5-201ENST00000624000 3189 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 AP000641.1-201ENST00000531988 1639 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 AP001541.1-201ENST00000623322 1904 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AL359976.1-201ENST00000418655 3528 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LMX1BO60663 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LMX1BO60663 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC007562.1-201ENST00000421819 517 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AL356806.1-201ENST00000422524 916 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AL157884.1-201ENST00000424561 454 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC083862.1-201ENST00000427378 1242 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC110602.1-201ENST00000437414 318 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC023274.2-201ENST00000445264 521 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 AL020997.1-201ENST00000446554 349 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 Z83838.1-202ENST00000456225 839 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 RN7SL254P-201ENST00000460609 284 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 MTND6P8-201ENST00000503471 522 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC112206.4-201ENST00000515142 405 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms