Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MAPRE1P3-201ENST00000435438 796 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AL353572.1-201ENST00000442490 417 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 GAPDHP53-201ENST00000458397 924 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 RN7SL563P-201ENST00000481233 298 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC126121.1-201ENST00000482313 553 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC106760.2-201ENST00000504159 619 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 RN7SKP242-201ENST00000515967 289 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 OR4A13P-201ENST00000529316 942 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AP001372.3-201ENST00000530510 609 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC074029.2-201ENST00000551045 634 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC007255.2-201ENST00000604053 631 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC004801.6-201ENST00000616571 978 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AP005212.3-201ENST00000619964 528 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC025262.3-201ENST00000623666 360 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ENSA-215ENST00000638926 360 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC068769.1-201ENST00000474767 2426 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC099654.3-201ENST00000447087 1546 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC233968.1-201ENST00000611212 1300 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AL080312.1-201ENST00000256654 824 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC017079.1-201ENST00000333650 415 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 STAG3L4-201ENST00000352103 530 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AP003170.5-201ENST00000397185 335 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 MTCYBP5-201ENST00000423752 1135 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 SNRPFP2-201ENST00000440710 251 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 HBG2-204ENST00000444587 307 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 RPL5P15-201ENST00000475870 897 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 CCNHP1-201ENST00000513311 678 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC111000.6-201ENST00000514471 709 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC103681.2-201ENST00000527450 567 ntTSL 4 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 EIF4A3P1-201ENST00000578499 647 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 RN7SL697P-201ENST00000582484 299 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 SIGLEC31P-201ENST00000594237 551 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC003992.1-201ENST00000635364 557 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 AP000641.1-201ENST00000531988 1639 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 OR5M2P-202ENST00000641241 4242 ntBASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
CCDC39Q9UFE4 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC7.8□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms