Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 RPL11P4-201ENST00000332269 436 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AL096829.1-201ENST00000413677 457 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 RPS7P8-201ENST00000418311 581 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AL645936.1-201ENST00000441979 518 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC114324.2-202ENST00000503812 134 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC131935.1-201ENST00000524621 333 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC021269.1-201ENST00000526860 705 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC024267.2-201ENST00000582737 417 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AL592429.1-201ENST00000403909 1473 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC42Q96M95 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AC004076.2-201ENST00000620532 3323 ntBASIC6.45□□□□□ -1.38
CCDC42Q96M95 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC42Q96M95 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC022325.1-201ENST00000502748 2199 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 U3.10-201ENST00000364459 214 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 RNA5SP77-201ENST00000365394 120 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 MIR431-201ENST00000385266 114 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 METTL15P3-201ENST00000415522 1221 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 WDR82P2-201ENST00000444540 928 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL445991.1-201ENST00000450381 475 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 RN7SL502P-201ENST00000481857 290 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC095052.1-201ENST00000509955 863 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL591222.2-201ENST00000604443 754 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AC119674.1-202ENST00000641333 1860 ntBASIC6.44□□□□□ -1.38
CCDC42Q96M95 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC42Q96M95 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms