Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Hmgb3O54879 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC14.16□□□□□ -0.14
Hmgb3O54879 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hmgb3O54879 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC14.15□□□□□ -0.14
Hmgb3O54879 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.15□□□□□ -0.14
Hmgb3O54879 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC14.15□□□□□ -0.14
Hmgb3O54879 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Hmgb3O54879 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Hmgb3O54879 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Hmgb3O54879 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.14□□□□□ -0.15
Hmgb3O54879 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Hmgb3O54879 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC14.14□□□□□ -0.15
Hmgb3O54879 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC14.14□□□□□ -0.15
Hmgb3O54879 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC14.14□□□□□ -0.15
Hmgb3O54879 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Hmgb3O54879 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Hmgb3O54879 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC14.13□□□□□ -0.15
Hmgb3O54879 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC14.13□□□□□ -0.15
Hmgb3O54879 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Hmgb3O54879 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms