Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR4732-201ENST00000581873 76 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 MIR6811-201ENST00000620409 58 ntBASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC42Q96M95 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC42Q96M95 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 RN7SKP128-201ENST00000364270 303 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 MYL6P5-201ENST00000412707 459 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 AL360013.1-201ENST00000419031 858 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 OR5W1P-201ENST00000423705 938 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 OR6R1P-201ENST00000431838 940 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC234771.4-201ENST00000441416 730 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 CXCR2P1-202ENST00000443392 1074 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 REG1CP-206ENST00000447469 496 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 RN7SL39P-201ENST00000462264 297 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 CR383656.1-201ENST00000484916 377 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 RN7SL267P-201ENST00000485107 261 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 RN7SL104P-201ENST00000498686 293 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AP001357.1-201ENST00000586304 1053 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AL390877.1-201ENST00000605704 214 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 CLUHP10-201ENST00000631979 980 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AP001153.1-201ENST00000641024 338 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
CCDC42Q96M95 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 THAP12P9-201ENST00000503971 2360 ntBASIC6.51□□□□□ -1.37
CCDC42Q96M95 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC42Q96M95 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 RNU105B-201ENST00000364478 208 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC245096.1-201ENST00000413104 546 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC013403.1-201ENST00000436954 263 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AL512593.1-201ENST00000444758 779 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AL034369.1-201ENST00000453808 477 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AP003385.3-201ENST00000472498 287 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 RN7SL790P-201ENST00000474043 298 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 RPS7P11-201ENST00000484240 586 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 ST13P12-201ENST00000508958 1094 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC090958.1-201ENST00000511122 351 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 RN7SKP288-201ENST00000516227 268 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AP004607.5-201ENST00000532034 217 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC124891.1-201ENST00000536322 519 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms