Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC004014.2-201ENST00000623718 5122 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 HMGB1P20-201ENST00000402555 677 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 LSM5-203ENST00000409782 649 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AL139148.1-201ENST00000427122 680 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CCNB1IP1P1-201ENST00000428976 839 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 RPS27P18-201ENST00000431701 247 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 TRIM60P16-201ENST00000444048 694 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 FAM27E4-201ENST00000605259 342 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 AL645933.2-201ENST00000606743 1207 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 C4BPAP1-201ENST00000415474 1893 ntBASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC88AQ3V6T2 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 PARP4P1-201ENST00000435945 2337 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 RPL36P18-201ENST00000419316 318 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AL451136.1-201ENST00000435399 325 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC091685.2-201ENST00000454924 864 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC008953.1-201ENST00000497334 318 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 CASP5-209ENST00000531367 879 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 DPPA2P4-201ENST00000563717 878 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AP002884.5-201ENST00000595053 1132 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC096861.1-201ENST00000616652 240 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC118658.2-201ENST00000618697 459 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC136428.4-201ENST00000634254 1155 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 AC235565.1-201ENST00000456962 1325 ntBASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC88AQ3V6T2 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 MIR433-201ENST00000384837 93 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 KIF4CP-201ENST00000422742 1279 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 H2AFZP6-201ENST00000444403 394 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 MORF4-201ENST00000447135 971 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC231760.1-201ENST00000498002 260 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC138866.2-201ENST00000508650 584 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC044860.2-201ENST00000561005 179 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 MIR4505-201ENST00000582238 73 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 OR7A1P-201ENST00000601206 970 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 IMMP1LP3-201ENST00000604197 224 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC027088.4-201ENST00000611559 1947 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 U3.2-201ENST00000362981 210 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 SNORA70-201ENST00000384436 135 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 GAS5-218ENST00000448718 565 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 RPL23AP60-201ENST00000450011 454 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AURKAPS1-201ENST00000451805 1212 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 RN7SL329P-201ENST00000467740 299 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 BX510359.5-201ENST00000515651 304 ntBASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms