Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 RN7SL475P-201ENST00000583379 298 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA3P55318 AC005332.4-201ENST00000592752 579 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA3P55318 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA3P55318 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
FOXA3P55318 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
FOXA3P55318 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 AL136984.1-201ENST00000607611 1893 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA3P55318 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
FOXA3P55318 RNA5SP382-201ENST00000363355 112 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 SNORA43.1-201ENST00000364863 140 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 TINAG-202ENST00000370864 692 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 SNORA5.1-201ENST00000384275 131 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 CD200R1L-201ENST00000398214 1296 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 MYL6P5-201ENST00000412707 459 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC091492.1-201ENST00000419844 272 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 MGAT2P2-201ENST00000427194 797 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
FOXA3P55318 PUDPP2-201ENST00000431423 643 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC138761.5-201ENST00000433967 325 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 ATP5LP4-201ENST00000434169 307 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 MTND2P40-201ENST00000436718 841 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXA3P55318 AC007790.1-201ENST00000439081 782 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXA3P55318 RPS12P20-201ENST00000464109 380 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 RN7SL456P-201ENST00000469290 295 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 RN7SL643P-201ENST00000471845 291 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 AC124945.1-201ENST00000485133 188 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 RN7SL714P-201ENST00000487050 298 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 RN7SL445P-201ENST00000495609 293 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXA3P55318 SCARNA11.1-201ENST00000516918 132 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 CARSP2-201ENST00000520688 277 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.53□□□□□ -1.68
FOXA3P55318 PDCL3P1-201ENST00000534575 734 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXA3P55318 AC026956.1-201ENST00000558741 396 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC4.53□□□□□ -1.68
FOXA3P55318 AL132640.2-202ENST00000559732 614 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 AC073046.2-201ENST00000604756 527 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC114477.1-201ENST00000605097 605 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AL137067.2-201ENST00000621202 131 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 AC022400.9-201ENST00000623633 273 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
FOXA3P55318 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 AC068870.3-201ENST00000625077 2536 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA3P55318 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA3P55318 MAPK10-328ENST00000641553 4009 ntBASIC4.53□□□□□ -1.68
FOXA3P55318 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
FOXA3P55318 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.69
FOXA3P55318 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 AP000473.2-201ENST00000602659 1537 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 EEF1A1P30-201ENST00000429708 1315 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms