Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 SNORA58B-201ENST00000364259 136 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RNA5SP284-201ENST00000384547 118 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RN7SKP216-201ENST00000411050 312 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC097463.1-201ENST00000447288 481 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 HMGN1P8-201ENST00000463578 288 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RN7SL104P-201ENST00000498686 293 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RN7SKP35-201ENST00000517210 151 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 OR4A13P-201ENST00000529316 942 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC016144.1-201ENST00000548175 1087 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC007225.2-201ENST00000562529 256 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 RN7SL404P-201ENST00000582421 281 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 GTF2IP6-201ENST00000583143 541 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC008507.3-201ENST00000585753 472 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC034229.6-201ENST00000623704 224 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AL049767.1-202ENST00000637826 242 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AL137058.3-201ENST00000624531 3099 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 CDY5P-201ENST00000411487 1580 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 CDY9P-201ENST00000451397 1580 ntBASIC6.3□□□□□ -1.4
COL28A1Q2UY09 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.3□□□□□ -1.4
COL28A1Q2UY09 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 RNU1-84P-201ENST00000365447 164 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AL451142.1-201ENST00000375867 775 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 CDY8P-201ENST00000428380 1279 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 CDY20P-201ENST00000447528 1279 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 RN7SL610P-201ENST00000463845 291 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 RPL12P31-201ENST00000478433 450 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 RPS23P1-201ENST00000491662 432 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC073581.1-201ENST00000519036 575 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC025423.2-201ENST00000537570 439 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC140063.1-201ENST00000541343 259 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC092718.4-201ENST00000566639 716 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 MIR4489-201ENST00000578869 62 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC091133.5-201ENST00000603088 301 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 RPSAP75-201ENST00000605848 301 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 FAM72A-208ENST00000607379 1139 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC096586.2-201ENST00000610260 441 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 SHQ1P1-201ENST00000437111 1544 ntBASIC6.29□□□□□ -1.4
COL28A1Q2UY09 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms