Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-316P-201ENST00000391027 107 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL033519.1-201ENST00000407266 307 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 RN7SKP281-201ENST00000410472 352 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 RNA5SP251-201ENST00000410614 137 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 RN7SKP91-201ENST00000410852 288 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 RNA5SP155-201ENST00000411154 129 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL359092.1-201ENST00000417156 265 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL596268.1-201ENST00000427910 1048 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AK3P5-201ENST00000432033 519 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 KATNBL1P2-201ENST00000433311 835 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC097523.2-201ENST00000435551 652 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 RPS27AP3-201ENST00000453803 454 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL022319.1-201ENST00000458183 1167 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 MARK2P8-201ENST00000476069 952 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 EIF4E2P2-201ENST00000492033 736 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC026956.1-201ENST00000558741 396 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 HNRNPA1P74-201ENST00000560782 835 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 ARGFXP2-201ENST00000579304 949 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC005514.1-201ENST00000623521 208 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AC015799.1-201ENST00000622996 3122 ntBASIC5.49□□□□□ -1.53
NKX3-1Q99801 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.49□□□□□ -1.53
NKX3-1Q99801 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
NKX3-1Q99801 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 RNA5SP478-201ENST00000364657 115 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL451046.1-201ENST00000406097 534 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 ALDH7A1P4-201ENST00000412255 178 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 RANP6-201ENST00000413691 644 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL022324.2-201ENST00000434827 780 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 LDHAP2-201ENST00000437325 985 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 CCNJP1-201ENST00000450600 1149 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC073476.1-201ENST00000452854 407 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC002075.1-201ENST00000457396 676 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 NREP-217ENST00000509025 987 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 CCNHP1-201ENST00000513311 678 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 NREP-223ENST00000515855 801 ntTSL 4 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 MTND2P7-201ENST00000521337 640 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC110056.1-201ENST00000525759 911 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms