Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
FOXA1P55317 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 SNORD1C-201ENST00000363315 78 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.87□□□□□ -1.47
FOXA1P55317 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC5.87□□□□□ -1.47
FOXA1P55317 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 RPL12P16-201ENST00000431098 498 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.87□□□□□ -1.47
FOXA1P55317 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.87□□□□□ -1.47
FOXA1P55317 PA2G4P1-201ENST00000442248 1197 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 RPS18P1-201ENST00000447840 458 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.87□□□□□ -1.47
FOXA1P55317 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 RNU2-45P-201ENST00000516068 187 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 NATP-201ENST00000523491 878 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC5.87□□□□□ -1.47
FOXA1P55317 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.87□□□□□ -1.47
FOXA1P55317 HNRNPCP1-201ENST00000556181 766 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 AC012368.3-201ENST00000604190 219 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 uc_338.26-201ENST00000612659 160 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 MIR6811-201ENST00000620409 58 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 MAPK10-350ENST00000641777 965 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.87□□□□□ -1.47
FOXA1P55317 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 AC005224.3-201ENST00000584683 2140 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 AC022325.1-201ENST00000502748 2199 ntBASIC5.87□□□□□ -1.47
FOXA1P55317 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
FOXA1P55317 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.87□□□□□ -1.47
FOXA1P55317 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.87□□□□□ -1.47
FOXA1P55317 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.86□□□□□ -1.47
FOXA1P55317 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.86□□□□□ -1.47
FOXA1P55317 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 RPS15AP30-201ENST00000420976 390 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC5.86□□□□□ -1.47
FOXA1P55317 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.86□□□□□ -1.47
FOXA1P55317 AC021876.1-201ENST00000425959 359 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AL590399.2-201ENST00000427536 309 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.86□□□□□ -1.47
FOXA1P55317 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.86□□□□□ -1.47
FOXA1P55317 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
FOXA1P55317 AL445991.1-201ENST00000450381 475 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 RBMY2HP-201ENST00000457961 720 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.86□□□□□ -1.47
FOXA1P55317 RPL23AP40-201ENST00000487630 390 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 TRBV5-2-201ENST00000489095 273 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 CCDC11P1-201ENST00000503137 1162 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AC095052.1-201ENST00000509955 863 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.86□□□□□ -1.47
FOXA1P55317 AK6-204ENST00000512561 587 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.86□□□□□ -1.47
FOXA1P55317 AC021269.1-201ENST00000526860 705 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.86□□□□□ -1.47
FOXA1P55317 HMGN1P26-201ENST00000558737 303 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.86□□□□□ -1.47
FOXA1P55317 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.86□□□□□ -1.47
FOXA1P55317 NPM1P42-201ENST00000560329 862 ntBASIC5.86□□□□□ -1.47
FOXA1P55317 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.86□□□□□ -1.47
FOXA1P55317 AC005632.2-201ENST00000564271 828 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 1174.8 ms