Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RN7SL352P-201ENST00000466002 277 ntBASIC4.59□□□□□ -1.67
FOXA3P55318 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.59□□□□□ -1.67
FOXA3P55318 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC4.59□□□□□ -1.67
FOXA3P55318 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXA3P55318 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXA3P55318 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA3P55318 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXA3P55318 AC015689.2-201ENST00000528172 1738 ntBASIC4.59□□□□□ -1.67
FOXA3P55318 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC4.59□□□□□ -1.67
FOXA3P55318 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.59□□□□□ -1.67
FOXA3P55318 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC4.59□□□□□ -1.67
FOXA3P55318 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA3P55318 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC4.59□□□□□ -1.67
FOXA3P55318 AL163952.1-202ENST00000569625 600 ntBASIC4.59□□□□□ -1.67
FOXA3P55318 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC4.59□□□□□ -1.67
FOXA3P55318 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
FOXA3P55318 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC4.59□□□□□ -1.67
FOXA3P55318 LINC02019-201ENST00000608605 2060 ntBASIC4.59□□□□□ -1.67
FOXA3P55318 MIR7159-201ENST00000620587 66 ntBASIC4.59□□□□□ -1.67
FOXA3P55318 OR5G5P-204ENST00000627642 621 ntBASIC4.59□□□□□ -1.67
FOXA3P55318 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
FOXA3P55318 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA3P55318 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.68
FOXA3P55318 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA3P55318 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA3P55318 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA3P55318 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA3P55318 AC114774.1-201ENST00000507410 1770 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA3P55318 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 SNRPG-201ENST00000272348 625 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 RNA5SP301-201ENST00000362537 121 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 RN7SKP130-201ENST00000364924 301 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
FOXA3P55318 RNU1-56P-201ENST00000391303 164 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 NPM1P31-201ENST00000399021 764 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 FIGN-202ENST00000409634 746 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 MEG8-201ENST00000414488 800 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA3P55318 PTCD2P2-201ENST00000415579 1095 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 VTI1BP4-201ENST00000427516 527 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 NPM1P18-201ENST00000434232 732 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA3P55318 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC016908.1-201ENST00000442571 1219 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AC090954.1-201ENST00000445502 361 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA3P55318 RANP2-201ENST00000456833 229 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA3P55318 RN7SL263P-201ENST00000467969 290 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 RN7SL145P-201ENST00000469955 296 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AC018475.1-201ENST00000478358 465 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 RPL23AP40-201ENST00000487630 390 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 PFN2-213ENST00000494827 793 ntTSL 4 BASIC4.58□□□□□ -1.68
FOXA3P55318 RPL24-206ENST00000495401 478 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 GLUD1P3-202ENST00000508551 200 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AP005902.2-201ENST00000518393 307 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 OR4C1P-201ENST00000530880 937 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA3P55318 BMS1P8-201ENST00000565049 1178 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC018521.4-201ENST00000578239 531 ntTSL 4 BASIC4.58□□□□□ -1.68
FOXA3P55318 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC4.58□□□□□ -1.68
FOXA3P55318 AL022394.1-201ENST00000606979 292 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AL355974.3-201ENST00000617383 467 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC096708.4-201ENST00000620563 552 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
FOXA3P55318 AC005618.4-201ENST00000625053 554 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 AC024651.2-201ENST00000562480 2098 ntBASIC4.58□□□□□ -1.68
FOXA3P55318 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA3P55318 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA3P55318 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA3P55318 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
FOXA3P55318 RPL31P11-201ENST00000426558 1558 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXA3P55318 C14orf177-201ENST00000325812 1284 ntAPPRIS P2 TSL 2 BASIC4.57□□□□□ -1.68
FOXA3P55318 RPSAP44-201ENST00000406712 884 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 SETP22-201ENST00000412243 957 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms