Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORD8-201ENST00000363915 110 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 RGS5-202ENST00000367903 934 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 LCN1P2-201ENST00000372030 223 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL034417.1-201ENST00000399343 800 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 RPLP1P10-201ENST00000413972 339 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC006509.1-201ENST00000420788 634 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 CYCSP52-201ENST00000422857 310 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 BMP6P1-201ENST00000431230 679 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 GAPDHP20-201ENST00000444107 1007 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 WDR82P2-201ENST00000444540 928 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL121578.2-201ENST00000448797 447 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 VN1R38P-201ENST00000450265 887 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 NPM1P9-201ENST00000453156 844 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 RPL31P11-202ENST00000454082 372 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 RN7SL221P-201ENST00000466190 281 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 SLC25A51P1-201ENST00000468432 871 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 RPL19P11-201ENST00000495944 589 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC025857.1-201ENST00000525252 377 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC091133.5-201ENST00000603088 301 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL390877.1-201ENST00000605704 214 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL133406.3-201ENST00000606817 541 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL008723.3-201ENST00000608926 449 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC127071.2-201ENST00000623293 527 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC022726.2-201ENST00000634673 547 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC132825.8-201ENST00000640783 297 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC005225.5-201ENST00000623547 2225 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 AC010132.4-201ENST00000569883 1368 ntBASIC5.52□□□□□ -1.53
NKX3-1Q99801 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NKX3-1Q99801 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.52□□□□□ -1.53
NKX3-1Q99801 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AOX3P-204ENST00000491025 2107 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 SAMMSON-210ENST00000641260 1308 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 GUCY1B2-204ENST00000531898 1979 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC139426.3-201ENST00000605648 2059 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 RNA5SP514-201ENST00000363717 111 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 RN7SKP237-201ENST00000364663 301 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 UBE2V1P14-201ENST00000415815 558 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AL929472.1-201ENST00000417484 429 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 BX119904.3-201ENST00000428194 957 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 NPM1P48-201ENST00000436002 853 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC234771.4-201ENST00000441416 730 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 RN7SL70P-201ENST00000478322 302 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC044810.1-201ENST00000480271 711 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 PPP1R11P1-201ENST00000486095 376 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC093878.1-201ENST00000515630 432 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 RN7SL208P-201ENST00000577964 296 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AP000919.1-201ENST00000582850 985 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.51□□□□□ -1.53
NKX3-1Q99801 AL352984.2-202ENST00000613699 155 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.51□□□□□ -1.53
NKX3-1Q99801 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms