Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC108120.1-201ENST00000506543 991 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC109458.1-201ENST00000508858 316 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RN7SKP31-201ENST00000516354 278 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RN7SKP2-201ENST00000517003 319 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC022778.1-201ENST00000518302 545 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 CA1-219ENST00000523022 1208 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 SLN-202ENST00000525934 436 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TPRXL-211ENST00000532880 754 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AL512347.1-201ENST00000566420 503 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 FLJ21408-204ENST00000566854 601 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 MIR3187-201ENST00000583431 70 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC087683.1-201ENST00000591187 441 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 OR7A18P-201ENST00000600416 277 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC026367.2-201ENST00000610630 553 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 NUDT13-208ENST00000617744 928 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC009509.4-201ENST00000619202 509 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AL356266.1-201ENST00000623311 483 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC012100.3-201ENST00000624738 575 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC068137.3-201ENST00000639191 341 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC073869.6-201ENST00000640656 341 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC099063.3-201ENST00000642066 185 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RGS7-202ENST00000366563 2206 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 B3GALT5-202ENST00000380618 2763 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 SLC16A1P1-201ENST00000486743 1510 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 TBX5-AS1-201ENST00000528549 3620 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 KLRB1-201ENST00000229402 1448 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 AC093225.1-201ENST00000506867 1408 ntBASIC6.08□□□□□ -1.44
CCDC140Q96MF4 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 WDR31-203ENST00000374195 3101 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
CCDC140Q96MF4 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 EEF1A1P3-201ENST00000417549 1385 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC005840.3-201ENST00000541888 1803 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 RPS3A-201ENST00000274065 934 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 RNA5SP378-201ENST00000363646 120 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 RN7SKP76-201ENST00000364419 323 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AL109918.1-202ENST00000406724 436 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 RPL23AP47-201ENST00000408017 460 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 PIGPP2-201ENST00000411569 458 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 CDK8P2-201ENST00000415020 547 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 SLIT1-AS1-201ENST00000424428 689 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC004160.2-201ENST00000425837 563 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 BLOC1S2P1-201ENST00000428431 301 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 RPL31P54-201ENST00000429803 370 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC098483.1-202ENST00000436515 967 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 LINC01865-202ENST00000436808 853 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC092641.1-201ENST00000440229 772 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC092809.1-201ENST00000441469 474 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AL592182.2-201ENST00000442477 858 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 YWHABP1-201ENST00000445359 727 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC239798.1-201ENST00000449024 1176 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 PRELID1P3-201ENST00000450055 643 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC092687.2-201ENST00000452909 568 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 DNAJB5P1-201ENST00000454004 806 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 MTCYBP1-201ENST00000454315 1119 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 MED28P8-201ENST00000454831 521 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC140Q96MF4 NDUFS5P2-201ENST00000484004 306 ntBASIC6.07□□□□□ -1.44
CCDC140Q96MF4 AC011825.1-201ENST00000484967 388 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms