Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC106754.1-201ENST00000562632 1513 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AL589993.1-201ENST00000407450 2524 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC6.85□□□□□ -1.31
USP39Q53GS9 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC007993.1-201ENST00000621298 2430 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.84□□□□□ -1.31
USP39Q53GS9 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC007938.1-201ENST00000562524 2902 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
USP39Q53GS9 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC6.84□□□□□ -1.31
USP39Q53GS9 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.84□□□□□ -1.31
USP39Q53GS9 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
USP39Q53GS9 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 RPL12P13-201ENST00000310055 497 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 RN7SKP15-201ENST00000364742 309 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 ZNF736P7Y-201ENST00000425158 820 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AL590128.1-201ENST00000433407 286 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.84□□□□□ -1.31
USP39Q53GS9 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC6.84□□□□□ -1.31
USP39Q53GS9 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC115223.1-201ENST00000466377 870 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AC112484.3-201ENST00000505910 329 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC117522.2-201ENST00000510049 657 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC084121.1-201ENST00000533882 835 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC106785.3-201ENST00000564064 847 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC063977.7-201ENST00000594454 337 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 BNIP3P32-201ENST00000600015 554 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC6.84□□□□□ -1.31
USP39Q53GS9 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AL356608.1-201ENST00000610034 820 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 AC004241.2-201ENST00000614562 444 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 MIR6721-201ENST00000617181 87 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC004943.1-203ENST00000624370 1074 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC099654.3-201ENST00000447087 1546 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
USP39Q53GS9 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.84□□□□□ -1.31
USP39Q53GS9 AC009135.2-201ENST00000624136 1768 ntBASIC6.84□□□□□ -1.31
USP39Q53GS9 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.84□□□□□ -1.31
USP39Q53GS9 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
USP39Q53GS9 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.84□□□□□ -1.32
USP39Q53GS9 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
USP39Q53GS9 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 LINC01613-201ENST00000561476 2780 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
USP39Q53GS9 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 RNY3P9-201ENST00000384727 106 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AL590635.1-201ENST00000406314 586 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AL360013.1-201ENST00000419031 858 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC6.83□□□□□ -1.32
USP39Q53GS9 PSMD10P2-201ENST00000432890 672 ntBASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms