Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 AL390198.2-201ENST00000510553 222 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 RNU6-467P-201ENST00000517027 110 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC008429.2-201ENST00000523057 864 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AP005639.1-201ENST00000526939 192 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC024255.1-201ENST00000614376 102 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AC003001.2-201ENST00000616294 831 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AP002371.2-201ENST00000624450 503 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AL138960.2-201ENST00000625145 535 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 MIR1910-201ENST00000636955 80 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AC110373.1-201ENST00000505994 3505 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC5.65□□□□□ -1.51
LMX1BO60663 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.65□□□□□ -1.51
LMX1BO60663 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LMX1BO60663 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.65□□□□□ -1.51
LMX1BO60663 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
LMX1BO60663 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.65□□□□□ -1.51
LMX1BO60663 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LMX1BO60663 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LMX1BO60663 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.65□□□□□ -1.51
LMX1BO60663 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LMX1BO60663 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC010168.2-201ENST00000562691 5428 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC083799.1-201ENST00000366451 910 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
LMX1BO60663 AL050335.1-201ENST00000396909 869 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 PSMA6P1-201ENST00000400275 741 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 GAPDHP33-201ENST00000443168 1013 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 MGAT2P1-201ENST00000449718 797 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC144530.1-201ENST00000452862 555 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.64□□□□□ -1.51
LMX1BO60663 RN7SL413P-201ENST00000482700 297 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC021006.1-201ENST00000489849 553 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 RPL17P2-201ENST00000491913 451 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 MTND3P3-201ENST00000505004 126 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 SETP12-201ENST00000514068 805 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC021269.1-201ENST00000526860 705 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC005363.1-201ENST00000530779 351 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC124891.1-201ENST00000536322 519 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC005519.1-201ENST00000554490 601 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 EIF1AXP2-201ENST00000555940 413 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC026826.3-201ENST00000561747 158 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 RPL29P33-201ENST00000587474 316 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 ADAD1P2-201ENST00000588476 646 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 RPL21P136-201ENST00000605378 396 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC5.64□□□□□ -1.51
LMX1BO60663 PSMC1P4-201ENST00000515236 1327 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LMX1BO60663 LRRC37A15P-201ENST00000514785 1355 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 AC007114.2-201ENST00000576014 4281 ntBASIC5.64□□□□□ -1.51
LMX1BO60663 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.64□□□□□ -1.51
LMX1BO60663 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
LMX1BO60663 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms