Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RPL12P49-201ENST00000441100 121 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC073476.1-201ENST00000452854 407 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 SLC25A51P1-201ENST00000468432 871 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC138517.1-201ENST00000515724 568 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AL133399.1-201ENST00000527476 298 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 RPL41P2-201ENST00000544920 409 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC023968.1-201ENST00000560719 475 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 U1.25-201ENST00000614085 162 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 U1.34-201ENST00000618578 162 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 U1.31-201ENST00000620022 160 ntBASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
PCDH9Q9HC56 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 NR1H5P-201ENST00000452683 1377 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RN7SKP184-201ENST00000362348 333 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SNORD35A-201ENST00000363389 86 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SNORA64.3-201ENST00000365647 134 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 MIR433-201ENST00000384837 93 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RN7SKP129-201ENST00000410288 299 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 Z82198.3-201ENST00000421145 199 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC245291.3-201ENST00000443400 292 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RPL7L1P3-201ENST00000455249 689 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC004890.1-201ENST00000461005 181 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC007688.1-201ENST00000475592 759 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 OR9A1P-202ENST00000484361 945 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RN7SL612P-201ENST00000497704 295 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RN7SKP67-201ENST00000515905 235 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RNA5SP400-201ENST00000517155 111 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC009729.1-201ENST00000548873 1133 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 ARGFXP2-201ENST00000579304 949 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 HTR1DP1-201ENST00000616500 888 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CFTRP2-201ENST00000634304 199 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 AC116667.2-201ENST00000641075 823 ntBASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
PCDH9Q9HC56 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.49□□□□□ -1.37
PCDH9Q9HC56 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms