Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 RNU6-883P-201ENST00000384597 107 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 PRELID1P1-201ENST00000403549 660 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 HNRNPDP2-201ENST00000406475 478 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AL353692.2-201ENST00000407054 335 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.86□□□□□ -1.31
USP39Q53GS9 RN7SKP129-201ENST00000410288 299 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 HMGN1P6-201ENST00000438508 291 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 VN1R96P-201ENST00000446052 858 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AL034399.1-201ENST00000451535 380 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AC144530.1-201ENST00000452862 555 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AC021006.1-201ENST00000489849 553 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 RPL5P11-201ENST00000498068 893 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 AC025768.1-201ENST00000510057 267 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.86□□□□□ -1.31
USP39Q53GS9 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 SNRPCP6-201ENST00000528310 210 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AC005363.1-201ENST00000530779 351 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.86□□□□□ -1.31
USP39Q53GS9 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AC091057.3-201ENST00000602684 733 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AC005776.1-201ENST00000603164 290 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AL590032.1-201ENST00000604920 252 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 AC063952.1-203ENST00000634410 658 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 AC010325.3-201ENST00000641084 394 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 MAPK10-365ENST00000641902 3825 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.85□□□□□ -1.31
USP39Q53GS9 ZNF806-201ENST00000438300 1774 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 MAPK10-357ENST00000641831 2858 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.85□□□□□ -1.31
USP39Q53GS9 MAPK10-323ENST00000641493 3207 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC092821.3-202ENST00000641304 2767 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 RNA5SP485-201ENST00000365053 119 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 RNA5SP122-201ENST00000384457 108 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 RN7SKP62-201ENST00000384539 329 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
USP39Q53GS9 RNA5SP474-201ENST00000391234 90 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AL389925.1-201ENST00000432257 728 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC6.85□□□□□ -1.31
USP39Q53GS9 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 RPS4XP23-201ENST00000487801 237 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC6.85□□□□□ -1.31
USP39Q53GS9 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.85□□□□□ -1.31
USP39Q53GS9 AC020914.7-201ENST00000594477 545 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC091057.2-201ENST00000602594 792 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC004908.1-201ENST00000606572 541 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC120053.1-201ENST00000607706 736 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AL357153.4-201ENST00000620487 1016 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC034229.6-201ENST00000623704 224 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC068787.1-201ENST00000623908 691 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 AC111152.1-202ENST00000635848 339 ntBASIC6.85□□□□□ -1.31
USP39Q53GS9 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
USP39Q53GS9 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms