Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC8.2□□□□□ -1.1
HOXC9P31274 RNA5SP350-201ENST00000363298 111 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 MIR640-201ENST00000385086 96 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 RNA5SP178-201ENST00000410380 128 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 CYP4F30P-202ENST00000420048 405 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 AC097721.1-201ENST00000427150 1253 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC8.2□□□□□ -1.1
HOXC9P31274 AL355355.1-201ENST00000442900 793 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC8.2□□□□□ -1.1
HOXC9P31274 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 GEMIN2P1-201ENST00000454246 752 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 AC092865.4-201ENST00000477936 615 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 RN7SL214P-201ENST00000487317 265 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 RN7SL284P-201ENST00000498823 275 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 MRO-208ENST00000588444 866 ntTSL 3 BASIC8.2□□□□□ -1.1
HOXC9P31274 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC8.2□□□□□ -1.1
HOXC9P31274 AC013731.1-201ENST00000604340 883 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 RNA5SP440-201ENST00000612665 119 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 AL512624.1-201ENST00000613638 469 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 AL137067.2-201ENST00000621202 131 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC8.2□□□□□ -1.1
HOXC9P31274 AC012254.5-201ENST00000623573 478 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC8.2□□□□□ -1.1
HOXC9P31274 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
HOXC9P31274 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 MAPK10-323ENST00000641493 3207 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 RMST-210ENST00000640149 2844 ntTSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 AC127024.8-201ENST00000623719 2094 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 OR13C1P-202ENST00000641378 2919 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HOXC9P31274 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 AP000281.1-201ENST00000444036 316 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 GAS5-218ENST00000448718 565 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 BZW1P1-201ENST00000454901 1240 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 AC023141.9-201ENST00000458734 412 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 RPA2P3-201ENST00000533268 770 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC8.19□□□□□ -1.1
HOXC9P31274 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 MIR3189-201ENST00000578735 73 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 MIR5095-201ENST00000578844 88 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC8.19□□□□□ -1.1
HOXC9P31274 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 RPL12P48-201ENST00000605620 304 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 AC096861.1-201ENST00000616652 240 ntBASIC8.19□□□□□ -1.1
HOXC9P31274 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HOXC9P31274 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HOXC9P31274 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC8.19□□□□□ -1.1
HOXC9P31274 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
HOXC9P31274 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC8.18□□□□□ -1.1
HOXC9P31274 AC104447.1-201ENST00000624214 2124 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 AP003119.3-201ENST00000566747 4192 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 MIR433-201ENST00000384837 93 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
HOXC9P31274 EEF1B2P8-201ENST00000414101 671 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC8.18□□□□□ -1.1
HOXC9P31274 SETP21-201ENST00000514799 892 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
HOXC9P31274 COX6CP7-201ENST00000597056 208 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 AC141002.1-201ENST00000607025 279 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC8.18□□□□□ -1.1
HOXC9P31274 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC8.18□□□□□ -1.1
HOXC9P31274 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC8.18□□□□□ -1.1
HOXC9P31274 CIR1P2-201ENST00000514821 1342 ntBASIC8.18□□□□□ -1.1
HOXC9P31274 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC8.18□□□□□ -1.1
HOXC9P31274 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms