Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL590762.1-201ENST00000391782 432 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AL589994.1-201ENST00000404962 340 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 C2orf76-203ENST00000409523 747 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 AL357078.2-201ENST00000416486 427 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 GSTA6P-201ENST00000424144 582 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 AC083862.1-201ENST00000427378 1242 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 BRWD1P3-201ENST00000428816 390 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 HMGN1P6-201ENST00000438508 291 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 MGAT2P1-201ENST00000449718 797 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 AC009963.3-201ENST00000458090 486 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 RN7SL174P-201ENST00000475578 289 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 RN7SL187P-201ENST00000495587 303 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 PFN2-217ENST00000498307 556 ntTSL 4 BASIC7.45□□□□□ -1.22
COL6A1P12109 BOLA3P3-201ENST00000505182 232 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC055733.3-201ENST00000505214 523 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 MTATP6P1-201ENST00000514057 681 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 CYCSP25-201ENST00000525280 316 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 OR8K4P-201ENST00000534608 872 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 MED21-206ENST00000546323 575 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 MTND2P17-201ENST00000550281 688 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 NPM1P5-201ENST00000557228 838 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 CYCSP38-201ENST00000559840 322 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC7.45□□□□□ -1.22
COL6A1P12109 CD24P2-201ENST00000565486 219 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC7.45□□□□□ -1.22
COL6A1P12109 NPM1P45-201ENST00000583151 559 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 AL589863.1-201ENST00000595383 631 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 VN1R81P-201ENST00000602085 372 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 AC114878.2-201ENST00000604863 1251 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC073111.2-201ENST00000605657 1075 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC7.45□□□□□ -1.22
COL6A1P12109 AC024884.1-201ENST00000620583 399 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC068787.1-201ENST00000623908 691 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC010608.3-201ENST00000625048 527 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC7.45□□□□□ -1.22
COL6A1P12109 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.45□□□□□ -1.22
COL6A1P12109 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL6A1P12109 CDY7P-201ENST00000429883 1604 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AL359396.1-201ENST00000623151 2376 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 CASC19-261ENST00000641853 1638 ntBASIC7.45□□□□□ -1.22
COL6A1P12109 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
COL6A1P12109 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 SFTPD-AS1-201ENST00000608229 5001 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
COL6A1P12109 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL6A1P12109 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.44□□□□□ -1.22
COL6A1P12109 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 AL121949.2-201ENST00000403446 1548 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 LYARP1-201ENST00000436977 1501 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 RN7SKP62-201ENST00000384539 329 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 AL139805.1-201ENST00000407837 289 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 CBX1P3-201ENST00000413296 527 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 RPL21P50-201ENST00000417698 477 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 AC079355.1-201ENST00000421770 223 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 CLUHP1-201ENST00000435012 1190 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 BMS1P10-201ENST00000443754 1120 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC7.44□□□□□ -1.22
COL6A1P12109 AC068228.1-201ENST00000461723 211 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 MORF4L2P1-201ENST00000503761 858 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC7.44□□□□□ -1.22
COL6A1P12109 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL6A1P12109 AC117525.1-201ENST00000515228 503 ntBASIC7.44□□□□□ -1.22
COL6A1P12109 AC027308.1-201ENST00000517993 110 ntBASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms