Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.72□□□□□ -1.49
FOXF1Q12946 AC073365.1-203ENST00000641055 1992 ntBASIC5.72□□□□□ -1.49
FOXF1Q12946 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXF1Q12946 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 CCAT2-201ENST00000630920 1752 ntBASIC5.72□□□□□ -1.49
FOXF1Q12946 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 AC011815.2-201ENST00000618230 2021 ntBASIC5.72□□□□□ -1.49
FOXF1Q12946 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXF1Q12946 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXF1Q12946 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
FOXF1Q12946 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
FOXF1Q12946 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
FOXF1Q12946 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
FOXF1Q12946 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
FOXF1Q12946 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
FOXF1Q12946 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
FOXF1Q12946 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
FOXF1Q12946 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 RN7SKP250-201ENST00000363924 321 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 AL451142.1-201ENST00000375867 775 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC010086.1-201ENST00000437359 1052 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
FOXF1Q12946 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC005017.1-201ENST00000482002 490 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 RPL9P15-201ENST00000491096 532 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 RN7SL568P-201ENST00000493069 298 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
FOXF1Q12946 OR4D12P-201ENST00000509361 911 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.71□□□□□ -1.5
FOXF1Q12946 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC005632.2-201ENST00000564271 828 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXF1Q12946 AC024589.2-201ENST00000605642 1294 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 SNORA74.4-201ENST00000607595 199 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXF1Q12946 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.71□□□□□ -1.5
FOXF1Q12946 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 MAPK10-270ENST00000641102 3538 ntBASIC5.71□□□□□ -1.5
FOXF1Q12946 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXF1Q12946 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXF1Q12946 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.7□□□□□ -1.5
FOXF1Q12946 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXF1Q12946 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXF1Q12946 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXF1Q12946 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXF1Q12946 AC127024.8-201ENST00000623719 2094 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXF1Q12946 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXF1Q12946 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXF1Q12946 AL445238.1-204ENST00000400311 463 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AL353626.3-201ENST00000413399 657 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AL139158.1-201ENST00000424719 340 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 RPS7P14-201ENST00000426405 583 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AC094019.1-201ENST00000434678 472 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 POU5F1P5-201ENST00000445059 658 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AL133351.3-201ENST00000454998 193 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 RPL12P31-201ENST00000478433 450 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AC106822.1-201ENST00000502647 526 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AC010343.2-201ENST00000510162 224 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.7□□□□□ -1.5
FOXF1Q12946 RNA5SP400-201ENST00000517155 111 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXF1Q12946 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXF1Q12946 RPSAP75-201ENST00000605848 301 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AC005828.7-201ENST00000607331 556 ntBASIC5.7□□□□□ -1.5
FOXF1Q12946 AC006924.1-201ENST00000610750 559 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms