Protein–RNA interactions for Protein: Q07424

Cdx4, Homeobox protein CDX-4, mousemouse

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx4Q07424 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cdx4Q07424 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cdx4Q07424 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Cdx4Q07424 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cdx4Q07424 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
Cdx4Q07424 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Cdx4Q07424 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Cxcl14-202ENSMUST00000224801 1467 ntBASIC13.19□□□□□ -0.3
Cdx4Q07424 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Cdx4Q07424 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC13.19□□□□□ -0.3
Cdx4Q07424 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Cdx4Q07424 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC13.19□□□□□ -0.3
Cdx4Q07424 Gm18025-201ENSMUST00000221733 862 ntBASIC13.19□□□□□ -0.3
Cdx4Q07424 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Cdx4Q07424 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx4Q07424 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Mir2861-201ENSMUST00000175539 82 ntBASIC13.18□□□□□ -0.3
Cdx4Q07424 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Krtap5-1-202ENSMUST00000188274 742 ntBASIC13.18□□□□□ -0.3
Cdx4Q07424 Gm43183-201ENSMUST00000200632 547 ntBASIC13.18□□□□□ -0.3
Cdx4Q07424 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx4Q07424 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC13.18□□□□□ -0.3
Cdx4Q07424 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Gm45560-201ENSMUST00000211492 1472 ntBASIC13.17□□□□□ -0.3
Cdx4Q07424 Ddx41-204ENSMUST00000224765 2199 ntBASIC13.17□□□□□ -0.3
Cdx4Q07424 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Gm29791-202ENSMUST00000207888 369 ntBASIC13.17□□□□□ -0.3
Cdx4Q07424 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Gm43548-201ENSMUST00000197139 2353 ntBASIC13.17□□□□□ -0.3
Cdx4Q07424 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx4Q07424 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Cdx4Q07424 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms