Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC8.11□□□□□ -1.11
HMGB1P09429 AC140479.4-205ENST00000636339 820 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC8.11□□□□□ -1.11
HMGB1P09429 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 ZNF658B-201ENST00000602828 3408 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
HMGB1P09429 QRSL1P3-201ENST00000552666 1316 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
HMGB1P09429 AC125336.1-201ENST00000508893 2827 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 AC003973.3-201ENST00000624863 2822 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
HMGB1P09429 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
HMGB1P09429 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC8.1□□□□□ -1.11
HMGB1P09429 PHB2P1-201ENST00000434943 890 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 CACYBPP1-201ENST00000438592 684 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 RPS16P9-201ENST00000477220 427 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 RN7SL187P-201ENST00000495587 303 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 AC016550.3-201ENST00000515706 767 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC8.1□□□□□ -1.11
HMGB1P09429 IGHVII-49-1-201ENST00000521760 224 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 OR8X1P-201ENST00000534542 869 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC8.1□□□□□ -1.11
HMGB1P09429 AL135978.1-201ENST00000553618 1266 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 AC034236.3-201ENST00000605999 461 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 5S_rRNA.23-201ENST00000612086 102 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC8.1□□□□□ -1.11
HMGB1P09429 AC245407.2-201ENST00000614199 451 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 OR1N1-202ENST00000619659 939 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
HMGB1P09429 AC005753.1-201ENST00000623837 618 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.11
HMGB1P09429 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HMGB1P09429 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 AC093278.2-201ENST00000564956 2485 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC8.1□□□□□ -1.11
HMGB1P09429 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
HMGB1P09429 CAP1P2-201ENST00000417455 1409 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 Z97989.1-201ENST00000531702 2421 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 MT-RNR2-201ENST00000387347 1559 ntBASIC8.1□□□□□ -1.11
HMGB1P09429 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC8.09□□□□□ -1.11
HMGB1P09429 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 LPAL2-203ENST00000454031 2498 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 NEK2P4-201ENST00000425793 1329 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AL512310.3-201ENST00000547023 1335 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC8.09□□□□□ -1.11
HMGB1P09429 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 RN7SKP137-201ENST00000411074 307 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AC096537.2-201ENST00000413707 714 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC8.09□□□□□ -1.11
HMGB1P09429 AL645936.2-201ENST00000430565 928 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC8.09□□□□□ -1.11
HMGB1P09429 MEF2AP1-201ENST00000454867 863 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AC106800.3-201ENST00000511389 308 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AC087752.2-201ENST00000521219 281 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC8.09□□□□□ -1.11
HMGB1P09429 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC8.09□□□□□ -1.11
HMGB1P09429 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 HMGB1P42-201ENST00000532126 553 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 MIR4800-201ENST00000537353 80 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AP002373.2-201ENST00000541631 1060 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC8.09□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms