Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC009120.7-201ENST00000623452 780 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC073592.6-201ENST00000624271 415 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 MIR1910-201ENST00000636955 80 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AL121936.2-201ENST00000641935 662 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
HOXD4P09016 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXD4P09016 CLCA3P-203ENST00000490028 2781 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 AC010329.1-201ENST00000593903 8328 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
HOXD4P09016 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
HOXD4P09016 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.02□□□□□ -1.45
HOXD4P09016 AC079949.2-201ENST00000617117 2933 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC6.02□□□□□ -1.45
HOXD4P09016 Z97989.1-201ENST00000531702 2421 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 DDX43P1-201ENST00000510713 1763 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC020978.6-201ENST00000571197 3177 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 ZNF969P-201ENST00000510345 2341 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 AL359694.2-201ENST00000567753 1615 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
HOXD4P09016 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 RNU1-55P-201ENST00000365510 158 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
HOXD4P09016 RN7SKP232-201ENST00000410170 290 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 MTND6P1-201ENST00000417434 424 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 AL929472.1-201ENST00000417484 429 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 AL360013.1-201ENST00000419031 858 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 RPL7AP14-201ENST00000424041 802 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 AC239367.3-201ENST00000428996 814 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 RPS10P18-201ENST00000442662 495 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC097359.1-201ENST00000447946 463 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.01□□□□□ -1.45
HOXD4P09016 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC011853.1-201ENST00000518911 454 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 OR9L1P-201ENST00000529493 933 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.01□□□□□ -1.45
HOXD4P09016 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
HOXD4P09016 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.01□□□□□ -1.45
HOXD4P09016 AL137246.1-201ENST00000607072 977 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.01□□□□□ -1.45
HOXD4P09016 AL589743.6-201ENST00000611025 117 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 AL354702.2-202ENST00000641481 890 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 AL592429.1-201ENST00000403909 1473 ntBASIC6.01□□□□□ -1.45
HOXD4P09016 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HOXD4P09016 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
HOXD4P09016 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.01□□□□□ -1.45
HOXD4P09016 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6□□□□□ -1.45
HOXD4P09016 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6□□□□□ -1.45
HOXD4P09016 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms