Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC8.12□□□□□ -1.11
HMGB1P09429 CLCA3P-203ENST00000490028 2781 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 GMFG-201ENST00000253054 616 ntTSL 5 BASIC8.12□□□□□ -1.11
HMGB1P09429 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 OR10D1P-201ENST00000355343 936 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 RNA5SP65-201ENST00000363166 119 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 AL606490.7-201ENST00000433136 191 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC010240.2-201ENST00000445363 1205 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC8.12□□□□□ -1.11
HMGB1P09429 RN7SL382P-201ENST00000482631 282 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AF305872.1-201ENST00000485217 471 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC034244.2-201ENST00000514668 858 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 SUMO2P19-201ENST00000518920 295 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC026616.1-201ENST00000523157 525 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC021820.1-201ENST00000525564 808 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC8.12□□□□□ -1.11
HMGB1P09429 AL132640.1-201ENST00000559594 619 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 FAM30C-201ENST00000561158 410 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC244034.2-201ENST00000562504 509 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC091304.5-201ENST00000568969 158 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC015818.6-201ENST00000584274 634 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC8.12□□□□□ -1.11
HMGB1P09429 AC007347.2-201ENST00000623044 180 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 AL512329.1-201ENST00000404600 1592 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 MAPK10-344ENST00000641718 3746 ntBASIC8.12□□□□□ -1.11
HMGB1P09429 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
HMGB1P09429 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC8.12□□□□□ -1.11
HMGB1P09429 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HMGB1P09429 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 TTC39DP-201ENST00000416781 1688 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 RPL24P4-201ENST00000326586 421 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 PDCL3P5-201ENST00000398028 722 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 RN7SKP117-201ENST00000410175 264 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC8.11□□□□□ -1.11
HMGB1P09429 NFU1P1-201ENST00000413128 774 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
HMGB1P09429 AC114402.2-201ENST00000432760 643 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 CFL1P4-201ENST00000451536 498 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 OR7E7P-201ENST00000455678 1012 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 AL096803.1-201ENST00000456921 1021 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 CBX5P1-201ENST00000468470 561 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 PPP1R2P6-201ENST00000478565 588 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 RPL21P42-201ENST00000488408 464 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 RN7SL143P-201ENST00000496780 297 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 AC021146.11-201ENST00000503319 491 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 HAUS1P1-201ENST00000505275 832 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 IMPA1P1-201ENST00000510718 842 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 RNA5SP318-201ENST00000516352 92 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 MTCYBP19-201ENST00000517463 1124 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 ARL6IP1P3-201ENST00000524544 560 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 RBM7-208ENST00000545678 867 ntTSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 DCN-215ENST00000550099 719 ntTSL 2 BASIC8.11□□□□□ -1.11
HMGB1P09429 OR5BK1P-201ENST00000550421 823 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC8.11□□□□□ -1.11
HMGB1P09429 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HMGB1P09429 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
HMGB1P09429 WDR45BP1-201ENST00000583470 1029 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 MIR5682-201ENST00000584864 76 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC8.11□□□□□ -1.11
HMGB1P09429 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC8.11□□□□□ -1.11
HMGB1P09429 AL035410.2-201ENST00000604963 864 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 AC012467.1-201ENST00000607740 256 ntBASIC8.11□□□□□ -1.11
HMGB1P09429 AC010333.3-201ENST00000615100 402 ntBASIC8.11□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms