Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC112255.1-201ENST00000624070 2493 ntBASIC6.48□□□□□ -1.37
VMP1Q96GC9 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC011455.2-201ENST00000599320 3336 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 OR10D1P-201ENST00000355343 936 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 SNORA70.9-201ENST00000384370 135 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 AL136100.1-201ENST00000407696 330 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 SNRPFP2-201ENST00000440710 251 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 PSMA6P2-201ENST00000457574 686 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 AL133372.1-201ENST00000493565 745 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 LDHAP1-201ENST00000509421 992 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 CASC11-203ENST00000519071 791 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC100832.2-201ENST00000582080 776 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AL031658.2-201ENST00000616850 651 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC110597.1-201ENST00000562669 3176 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 ATP5BP1-201ENST00000411980 1574 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 THAP12P8-201ENST00000447914 2115 ntBASIC6.47□□□□□ -1.37
VMP1Q96GC9 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.47□□□□□ -1.37
VMP1Q96GC9 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
VMP1Q96GC9 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
VMP1Q96GC9 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
VMP1Q96GC9 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
VMP1Q96GC9 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 RNA5SP176-201ENST00000390956 110 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 RPLP1P10-201ENST00000413972 339 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 BMS1P11-201ENST00000442351 885 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AL845321.1-201ENST00000444603 348 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 BMS1P9-201ENST00000457640 885 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 PPP1R2P6-201ENST00000478565 588 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 RPS14P8-201ENST00000478778 369 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC090142.2-201ENST00000483263 416 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC113398.2-201ENST00000507630 558 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AP000662.1-201ENST00000530952 487 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC089984.3-201ENST00000552838 363 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AL109628.1-201ENST00000556877 366 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.46□□□□□ -1.38
VMP1Q96GC9 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 AP005212.4-201ENST00000614206 710 ntBASIC6.46□□□□□ -1.38
VMP1Q96GC9 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms