Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 DDX6P1-205ENST00000441966 1436 ntBASIC6.59□□□□□ -1.35
MSX2P35548 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 ABCA11P-202ENST00000504019 2110 ntBASIC6.59□□□□□ -1.35
MSX2P35548 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
MSX2P35548 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 SNORD51.1-201ENST00000365405 77 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AMELY-202ENST00000383036 621 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 BCL2L15-202ENST00000393316 1084 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 RPSAP42-201ENST00000403415 878 ntBASIC6.59□□□□□ -1.35
MSX2P35548 VN1R33P-201ENST00000411800 887 ntBASIC6.59□□□□□ -1.35
MSX2P35548 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AL390840.1-201ENST00000420303 988 ntBASIC6.59□□□□□ -1.35
MSX2P35548 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AC013268.2-201ENST00000420753 337 ntBASIC6.59□□□□□ -1.35
MSX2P35548 UQCRHP1-204ENST00000424609 274 ntBASIC6.59□□□□□ -1.35
MSX2P35548 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 MTND2P5-201ENST00000432656 1006 ntBASIC6.59□□□□□ -1.35
MSX2P35548 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
MSX2P35548 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 RNFT1P2-201ENST00000443064 757 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 RSL24D1P3-201ENST00000449255 495 ntBASIC6.59□□□□□ -1.35
MSX2P35548 RPSAP7-201ENST00000456871 885 ntBASIC6.59□□□□□ -1.35
MSX2P35548 SNORA81.1-201ENST00000458922 177 ntBASIC6.59□□□□□ -1.35
MSX2P35548 RN7SL563P-201ENST00000481233 298 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AP005202.1-201ENST00000489915 867 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC008040.4-201ENST00000494834 768 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC006387.1-203ENST00000494849 342 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AC097263.1-201ENST00000496795 606 ntBASIC6.59□□□□□ -1.35
MSX2P35548 CLDND1-205ENST00000502288 560 ntTSL 4 BASIC6.59□□□□□ -1.35
MSX2P35548 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 AC006070.1-201ENST00000508151 193 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX2P35548 SNORA76.2-201ENST00000517095 137 ntBASIC6.59□□□□□ -1.35
MSX2P35548 IGLV1-62-201ENST00000518003 441 ntBASIC6.59□□□□□ -1.35
MSX2P35548 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 AC069360.1-202ENST00000533941 557 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AC092375.1-201ENST00000550410 637 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.59□□□□□ -1.35
MSX2P35548 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC6.59□□□□□ -1.35
MSX2P35548 ZNF971P-201ENST00000562068 1249 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC023824.3-201ENST00000569003 562 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC064805.1-203ENST00000577560 526 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AP005136.2-201ENST00000583253 1049 ntBASIC6.59□□□□□ -1.35
MSX2P35548 RN7SL664P-201ENST00000584239 305 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX2P35548 AL365400.2-201ENST00000605604 902 ntBASIC6.59□□□□□ -1.35
MSX2P35548 HOTTIP_2.1-201ENST00000616633 376 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC013470.4-201ENST00000619978 986 ntBASIC6.59□□□□□ -1.35
MSX2P35548 AC110769.3-201ENST00000624567 1173 ntBASIC6.59□□□□□ -1.35
MSX2P35548 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 AC027279.1-201ENST00000568885 4284 ntBASIC6.59□□□□□ -1.35
MSX2P35548 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX2P35548 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX2P35548 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX2P35548 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX2P35548 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.59□□□□□ -1.36
MSX2P35548 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX2P35548 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX2P35548 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 AP000641.1-201ENST00000531988 1639 ntBASIC6.58□□□□□ -1.36
MSX2P35548 LCOR-201ENST00000286067 4542 ntBASIC6.58□□□□□ -1.36
MSX2P35548 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 RNU5E-10P-201ENST00000363506 118 ntBASIC6.58□□□□□ -1.36
MSX2P35548 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 RGS5-202ENST00000367903 934 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 RNU11-6P-201ENST00000391127 133 ntBASIC6.58□□□□□ -1.36
MSX2P35548 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 SULT1C4-202ENST00000409309 1045 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 FTOP1-201ENST00000419363 861 ntBASIC6.58□□□□□ -1.36
MSX2P35548 TRBV10-2-201ENST00000426318 395 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
MSX2P35548 GYG1P2-201ENST00000426437 1006 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX2P35548 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 MTCO2P3-201ENST00000442543 421 ntBASIC6.58□□□□□ -1.36
MSX2P35548 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC6.58□□□□□ -1.36
MSX2P35548 RNU7-157P-201ENST00000459600 66 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms