Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC061975.7-201ENST00000592016 2692 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 RNA5SP65-201ENST00000363166 119 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 U3.52-201ENST00000384034 216 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 MIR199B-201ENST00000384849 110 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 RPS7P12-201ENST00000422385 582 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 NAP1L4P2-201ENST00000425958 899 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC069154.1-201ENST00000432914 542 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 POU5F1P5-201ENST00000445059 658 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC115223.1-201ENST00000466377 870 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC021074.2-201ENST00000468434 172 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC094085.1-201ENST00000468914 584 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 OR52H2P-201ENST00000514607 902 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC122713.1-201ENST00000518368 1015 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 OR5D2P-201ENST00000524390 911 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 TRIM51DP-201ENST00000529746 596 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC016144.1-201ENST00000548175 1087 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 OR1E3-201ENST00000575608 948 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC007448.1-201ENST00000582714 234 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 SNORD96A-201ENST00000606577 79 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 MIR6862-1-201ENST00000613016 70 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 MIR6862-2-201ENST00000614755 70 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AC114546.4-201ENST00000624413 369 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 TEX41-255ENST00000626404 610 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 AP000641.1-201ENST00000531988 1639 ntBASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 Z97989.1-201ENST00000531702 2421 ntBASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 AC015871.3-201ENST00000618835 2261 ntBASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 OR5AQ1P-203ENST00000641818 1529 ntBASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.71□□□□□ -1.33
HDDC3Q8N4P3 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 RNA5SP512-201ENST00000364550 120 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 MIR1204-201ENST00000408388 67 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 GAPDHP33-201ENST00000443168 1013 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 GAPDHP16-201ENST00000448152 962 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AC093870.1-201ENST00000506837 213 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 HSD3BP3-201ENST00000514706 994 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 MIR4502-201ENST00000580432 81 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 uc_338.31-201ENST00000615595 186 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 OR52B5P-204ENST00000641744 3467 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 PSMC1P6-201ENST00000477233 1319 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 AC107980.1-201ENST00000558671 3355 ntBASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
HDDC3Q8N4P3 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HDDC3Q8N4P3 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms