Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL355355.2-201ENST00000442321 338 ntBASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 AP002982.1-201ENST00000492365 877 ntBASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 AL353708.3-201ENST00000610272 989 ntBASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 AP006587.1-201ENST00000534129 1502 ntBASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PAAF1Q9BRP4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 AC133561.5-201ENST00000635547 218 ntBASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PAAF1Q9BRP4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 LINC01023-201ENST00000606054 436 ntBASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 REXO1L10P-201ENST00000615707 1290 ntBASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.21■□□□□ 0.99
PAAF1Q9BRP4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.2■□□□□ 0.99
PAAF1Q9BRP4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.2■□□□□ 0.99
PAAF1Q9BRP4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 AC020907.5-201ENST00000624372 1936 ntBASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 PHGDH-210ENST00000641115 1638 ntBASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 NIFKP9-201ENST00000419265 221 ntBASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 NUDT16P1-203ENST00000513809 620 ntBASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 CR392000.1-201ENST00000624770 1228 ntBASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.2■□□□□ 0.98
PAAF1Q9BRP4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms