Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGA1P17096 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGA1P17096 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGA1P17096 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 AC020907.5-201ENST00000624372 1936 ntBASIC20.67■□□□□ 0.9
HMGA1P17096 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 KSR1P1-201ENST00000446298 240 ntBASIC20.67■□□□□ 0.9
HMGA1P17096 C1QL1P1-201ENST00000568105 661 ntBASIC20.67■□□□□ 0.9
HMGA1P17096 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGA1P17096 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGA1P17096 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGA1P17096 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGA1P17096 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.66■□□□□ 0.9
HMGA1P17096 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.66■□□□□ 0.9
HMGA1P17096 YBX1P10-201ENST00000444752 975 ntBASIC20.66■□□□□ 0.9
HMGA1P17096 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGA1P17096 KRT18P16-201ENST00000510337 1294 ntBASIC20.66■□□□□ 0.9
HMGA1P17096 LINC01023-201ENST00000606054 436 ntBASIC20.66■□□□□ 0.9
HMGA1P17096 REXO1L10P-201ENST00000615707 1290 ntBASIC20.66■□□□□ 0.9
HMGA1P17096 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HMGA1P17096 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.66■□□□□ 0.9
HMGA1P17096 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGA1P17096 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGA1P17096 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGA1P17096 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HMGA1P17096 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGA1P17096 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.65■□□□□ 0.9
HMGA1P17096 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.65■□□□□ 0.9
HMGA1P17096 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGA1P17096 AC012306.2-201ENST00000609350 630 ntBASIC20.65■□□□□ 0.9
HMGA1P17096 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGA1P17096 CR392000.1-201ENST00000624770 1228 ntBASIC20.65■□□□□ 0.9
HMGA1P17096 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGA1P17096 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGA1P17096 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 AC073314.1-201ENST00000568729 2216 ntBASIC20.65■□□□□ 0.9
HMGA1P17096 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGA1P17096 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGA1P17096 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGA1P17096 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGA1P17096 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.64■□□□□ 0.9
HMGA1P17096 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGA1P17096 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.64■□□□□ 0.89
HMGA1P17096 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGA1P17096 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGA1P17096 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGA1P17096 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGA1P17096 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGA1P17096 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
HMGA1P17096 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.64■□□□□ 0.89
HMGA1P17096 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HMGA1P17096 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGA1P17096 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGA1P17096 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGA1P17096 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGA1P17096 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.64■□□□□ 0.89
HMGA1P17096 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGA1P17096 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGA1P17096 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGA1P17096 RBM17P1-201ENST00000453646 1190 ntBASIC20.63■□□□□ 0.89
HMGA1P17096 AC116562.2-201ENST00000507042 360 ntBASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms