Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Gm16401-202ENSMUST00000197463 2074 ntBASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Trav11A0A0B4J1J9 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 AC125311.2-201ENSMUST00000227477 1940 ntBASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Ptprs-211ENSMUST00000223859 5588 ntBASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Dancr-204ENSMUST00000132389 2347 ntBASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Trav11A0A0B4J1J9 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Gm9867-201ENSMUST00000192212 2647 ntBASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Ap3s1-204ENSMUST00000225520 957 ntBASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC11.79□□□□□ -0.52
Trav11A0A0B4J1J9 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Gm29791-202ENSMUST00000207888 369 ntBASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC11.78□□□□□ -0.52
Trav11A0A0B4J1J9 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms