Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RN7SKP76-201ENST00000364419 323 ntBASIC6.66□□□□□ -1.34
MSX2P35548 SNORA27.3-201ENST00000364937 134 ntBASIC6.66□□□□□ -1.34
MSX2P35548 IGFL2-201ENST00000377693 607 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 NFU1P1-201ENST00000413128 774 ntBASIC6.66□□□□□ -1.34
MSX2P35548 HIGD1AP15-201ENST00000416198 280 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC015987.1-201ENST00000419211 804 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 EIF4A1P2-201ENST00000422633 1220 ntBASIC6.66□□□□□ -1.34
MSX2P35548 GAPDHP73-201ENST00000423411 1007 ntBASIC6.66□□□□□ -1.34
MSX2P35548 RPL23AP34-201ENST00000423483 410 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
MSX2P35548 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 CDY12P-201ENST00000440679 1015 ntBASIC6.66□□□□□ -1.34
MSX2P35548 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 CDY13P-201ENST00000445813 1015 ntBASIC6.66□□□□□ -1.34
MSX2P35548 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 BZW1P1-201ENST00000454901 1240 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 RN7SL797P-201ENST00000486314 297 ntBASIC6.66□□□□□ -1.34
MSX2P35548 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 LINC01085-203ENST00000511195 326 ntBASIC6.66□□□□□ -1.34
MSX2P35548 LECT2-203ENST00000512872 762 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 RNU6-334P-201ENST00000517072 102 ntBASIC6.66□□□□□ -1.34
MSX2P35548 SNORA70.23-201ENST00000517218 151 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 AC100854.1-201ENST00000520351 341 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 AP003499.1-201ENST00000527217 574 ntBASIC6.66□□□□□ -1.34
MSX2P35548 PRR13-203ENST00000546581 810 ntAPPRIS ALT2 TSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 AC011270.1-201ENST00000558606 583 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC106730.2-201ENST00000566641 540 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AF001548.1-201ENST00000577048 550 ntTSL 4 BASIC6.66□□□□□ -1.34
MSX2P35548 AF186192.2-204ENST00000581667 524 ntBASIC6.66□□□□□ -1.34
MSX2P35548 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 AC111186.1-201ENST00000604684 130 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC063962.1-201ENST00000608199 521 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 AC004839.1-201ENST00000610269 501 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AC090116.1-201ENST00000615679 446 ntBASIC6.66□□□□□ -1.34
MSX2P35548 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 AP003068.4-201ENST00000623192 802 ntBASIC6.66□□□□□ -1.34
MSX2P35548 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 AL513523.1-201ENST00000417868 1309 ntBASIC6.66□□□□□ -1.34
MSX2P35548 PSMC1P4-201ENST00000515236 1327 ntBASIC6.66□□□□□ -1.34
MSX2P35548 QRSL1P3-201ENST00000552666 1316 ntBASIC6.66□□□□□ -1.34
MSX2P35548 C15orf41-214ENST00000569302 1325 ntAPPRIS ALT1 TSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 EEF1A1P2-201ENST00000553854 1447 ntBASIC6.66□□□□□ -1.34
MSX2P35548 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX2P35548 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX2P35548 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX2P35548 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
MSX2P35548 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX2P35548 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
MSX2P35548 AL359694.2-201ENST00000567753 1615 ntBASIC6.65□□□□□ -1.34
MSX2P35548 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 RNU6-650P-201ENST00000365658 111 ntBASIC6.65□□□□□ -1.34
MSX2P35548 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX2P35548 RPL22P22-201ENST00000395439 379 ntBASIC6.65□□□□□ -1.34
MSX2P35548 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX2P35548 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX2P35548 AC068137.1-201ENST00000429272 584 ntBASIC6.65□□□□□ -1.34
MSX2P35548 VN1R108P-201ENST00000431580 830 ntBASIC6.65□□□□□ -1.34
MSX2P35548 RPL7P34-201ENST00000433316 712 ntBASIC6.65□□□□□ -1.34
MSX2P35548 HMGN2P24-201ENST00000433516 273 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 ZNF195-208ENST00000438262 1018 ntTSL 3 BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms