Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MEG8-201ENST00000414488 800 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 GAPDHP69-201ENST00000425504 1008 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC239367.3-201ENST00000428996 814 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 PUDPP2-201ENST00000431423 643 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC245452.2-201ENST00000435222 392 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 MYL6P3-201ENST00000436904 432 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 CT45A11P-201ENST00000448043 1134 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC002075.1-201ENST00000457396 676 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 RN7SL149P-201ENST00000465197 281 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC126615.1-201ENST00000470084 630 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 RN7SL216P-201ENST00000471607 298 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC074386.1-206ENST00000487102 761 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 SNORA58-201ENST00000505219 137 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 MTCYBP44-201ENST00000514835 823 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 SUMO2P19-201ENST00000518920 295 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AP004607.6-201ENST00000525033 1202 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC140063.1-201ENST00000541343 259 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AL109628.1-201ENST00000556877 366 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 PPIAP6-201ENST00000557078 499 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 RN7SL426P-201ENST00000579106 295 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 MIR4428-201ENST00000584884 73 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 TP53TG1_2.1-201ENST00000611226 182 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 AP000577.1-201ENST00000624366 878 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 SNX18P10-201ENST00000625014 519 ntBASIC5.09□□□□□ -1.59
HLA-DMBP28068 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DMBP28068 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DMBP28068 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
HLA-DMBP28068 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
HLA-DMBP28068 AC025809.2-201ENST00000625085 1802 ntBASIC5.09□□□□□ -1.6
HLA-DMBP28068 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.09□□□□□ -1.6
HLA-DMBP28068 AC126474.2-201ENST00000623268 1750 ntBASIC5.09□□□□□ -1.6
HLA-DMBP28068 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 RNA5SP514-201ENST00000363717 111 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 AL136100.1-201ENST00000407696 330 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC096537.2-201ENST00000413707 714 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 AL590128.1-201ENST00000433407 286 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC027124.1-201ENST00000440852 466 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 OR7E7P-201ENST00000455678 1012 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC079193.1-201ENST00000460497 588 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 RN7SL868P-201ENST00000485915 303 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC117395.1-201ENST00000487390 403 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DMBP28068 SCARNA11.1-201ENST00000516918 132 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC5.08□□□□□ -1.6
HLA-DMBP28068 AC089984.3-201ENST00000552838 363 ntBASIC5.08□□□□□ -1.6
HLA-DMBP28068 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms