Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.3□□□□□ -1.4
SOX3P41225 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 AC084782.1-201ENST00000564401 2465 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AL451064.2-201ENST00000623514 1654 ntBASIC6.3□□□□□ -1.4
SOX3P41225 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 NEK2P4-201ENST00000425793 1329 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AL512310.3-201ENST00000547023 1335 ntBASIC6.29□□□□□ -1.4
SOX3P41225 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SOX3P41225 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 RPS2P45-201ENST00000469997 2057 ntBASIC6.29□□□□□ -1.4
SOX3P41225 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SOX3P41225 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 TNPO1P2-201ENST00000426249 2665 ntBASIC6.29□□□□□ -1.4
SOX3P41225 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 RN7SKP271-201ENST00000410528 320 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.29□□□□□ -1.4
SOX3P41225 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX3P41225 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 AC234771.4-201ENST00000441416 730 ntBASIC6.29□□□□□ -1.4
SOX3P41225 WDR82P2-201ENST00000444540 928 ntBASIC6.29□□□□□ -1.4
SOX3P41225 CT45A11P-201ENST00000448043 1134 ntBASIC6.29□□□□□ -1.4
SOX3P41225 RN7SL187P-201ENST00000495587 303 ntBASIC6.29□□□□□ -1.4
SOX3P41225 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.29□□□□□ -1.4
SOX3P41225 SNX18P23-201ENST00000510867 677 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX3P41225 RNA5SP318-201ENST00000516352 92 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 AC073581.1-201ENST00000519036 575 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AP006587.5-201ENST00000532033 739 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 AC140063.1-201ENST00000541343 259 ntBASIC6.29□□□□□ -1.4
SOX3P41225 SNORA70D-201ENST00000578836 135 ntBASIC6.29□□□□□ -1.4
SOX3P41225 CCL2-202ENST00000580907 736 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX3P41225 AC016252.1-201ENST00000609721 474 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AC026951.2-201ENST00000613847 241 ntBASIC6.29□□□□□ -1.4
SOX3P41225 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 AC025287.2-201ENST00000621911 668 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AC127071.2-201ENST00000623293 527 ntBASIC6.29□□□□□ -1.4
SOX3P41225 AC027559.1-201ENST00000636288 271 ntBASIC6.29□□□□□ -1.4
SOX3P41225 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX3P41225 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 AC123912.3-201ENST00000600907 1367 ntBASIC6.29□□□□□ -1.4
SOX3P41225 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX3P41225 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX3P41225 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 AC093829.1-201ENST00000506662 1618 ntBASIC6.28□□□□□ -1.4
SOX3P41225 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 AC119674.1-204ENST00000641348 1343 ntBASIC6.28□□□□□ -1.4
SOX3P41225 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
SOX3P41225 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.28□□□□□ -1.4
SOX3P41225 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SOX3P41225 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SOX3P41225 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.28□□□□□ -1.4
SOX3P41225 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.28□□□□□ -1.4
SOX3P41225 SPATA20P1-201ENST00000423089 438 ntBASIC6.28□□□□□ -1.4
SOX3P41225 AL589794.1-201ENST00000424971 390 ntBASIC6.28□□□□□ -1.4
SOX3P41225 AL121578.1-201ENST00000428051 892 ntBASIC6.28□□□□□ -1.4
SOX3P41225 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.28□□□□□ -1.4
SOX3P41225 RPL23AP28-201ENST00000448062 470 ntBASIC6.28□□□□□ -1.4
SOX3P41225 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.28□□□□□ -1.4
SOX3P41225 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.28□□□□□ -1.4
SOX3P41225 MRPL57P6-201ENST00000506570 309 ntBASIC6.28□□□□□ -1.4
SOX3P41225 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC6.28□□□□□ -1.4
SOX3P41225 MINOS1P4-201ENST00000515470 318 ntBASIC6.28□□□□□ -1.4
SOX3P41225 AP000662.1-201ENST00000530952 487 ntBASIC6.28□□□□□ -1.4
SOX3P41225 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.28□□□□□ -1.4
SOX3P41225 SETP17-201ENST00000534163 817 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 211.2 ms