Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
LIG1P18858 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC8.35□□□□□ -1.07
LIG1P18858 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC8.35□□□□□ -1.07
LIG1P18858 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC8.35□□□□□ -1.07
LIG1P18858 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
LIG1P18858 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC8.35□□□□□ -1.07
LIG1P18858 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC8.35□□□□□ -1.07
LIG1P18858 FOLH1B-202ENST00000529567 2145 ntBASIC8.35□□□□□ -1.07
LIG1P18858 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
LIG1P18858 DDX43P2-201ENST00000604753 1354 ntBASIC8.35□□□□□ -1.07
LIG1P18858 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 AC127070.3-201ENST00000503695 3263 ntBASIC8.34□□□□□ -1.07
LIG1P18858 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
LIG1P18858 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
LIG1P18858 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
LIG1P18858 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC8.34□□□□□ -1.07
LIG1P18858 MIR301B-201ENST00000390813 78 ntBASIC8.34□□□□□ -1.07
LIG1P18858 RBBP4P4-201ENST00000398588 1289 ntBASIC8.34□□□□□ -1.07
LIG1P18858 LRRC37BP1-201ENST00000398851 714 ntBASIC8.34□□□□□ -1.07
LIG1P18858 SUMO2P13-201ENST00000403109 272 ntBASIC8.34□□□□□ -1.07
LIG1P18858 RN7SKP232-201ENST00000410170 290 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AC012560.1-202ENST00000421324 535 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 GAPDHP73-201ENST00000423411 1007 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC8.34□□□□□ -1.07
LIG1P18858 AC114402.2-201ENST00000432760 643 ntBASIC8.34□□□□□ -1.07
LIG1P18858 MED28P4-201ENST00000433137 572 ntBASIC8.34□□□□□ -1.07
LIG1P18858 MTND4P32-201ENST00000437189 1237 ntBASIC8.34□□□□□ -1.07
LIG1P18858 LIN28AP2-201ENST00000445283 458 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AC112492.1-201ENST00000449607 712 ntBASIC8.34□□□□□ -1.07
LIG1P18858 TCEAL4P1-201ENST00000453620 588 ntBASIC8.34□□□□□ -1.07
LIG1P18858 RN7SL228P-201ENST00000470060 303 ntBASIC8.34□□□□□ -1.07
LIG1P18858 RPS14P7-201ENST00000473701 448 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AC008799.2-201ENST00000484429 647 ntBASIC8.34□□□□□ -1.07
LIG1P18858 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 AC134698.1-201ENST00000511619 643 ntBASIC8.34□□□□□ -1.07
LIG1P18858 EIF3KP1-201ENST00000513279 656 ntBASIC8.34□□□□□ -1.07
LIG1P18858 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 AC120036.3-201ENST00000517826 292 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC8.34□□□□□ -1.07
LIG1P18858 AC007834.2-201ENST00000536310 343 ntBASIC8.34□□□□□ -1.07
LIG1P18858 RPL41P2-201ENST00000544920 409 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 AC036222.1-201ENST00000579972 701 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 AC012511.1-201ENST00000608140 449 ntBASIC8.34□□□□□ -1.07
LIG1P18858 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 RDM1-219ENST00000615378 542 ntTSL 3 BASIC8.34□□□□□ -1.07
LIG1P18858 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC8.34□□□□□ -1.07
LIG1P18858 PFKM-232ENST00000629846 381 ntTSL 4 BASIC8.34□□□□□ -1.07
LIG1P18858 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC8.34□□□□□ -1.07
LIG1P18858 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
LIG1P18858 KYNUP1-201ENST00000466683 1406 ntBASIC8.34□□□□□ -1.07
LIG1P18858 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 GTPBP10-202ENST00000257659 1740 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
LIG1P18858 MAPK10-270ENST00000641102 3538 ntBASIC8.34□□□□□ -1.07
LIG1P18858 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
LIG1P18858 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
LIG1P18858 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.08
LIG1P18858 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
LIG1P18858 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC8.34□□□□□ -1.08
LIG1P18858 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 ABCA11P-202ENST00000504019 2110 ntBASIC8.33□□□□□ -1.08
LIG1P18858 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC8.33□□□□□ -1.08
LIG1P18858 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC8.33□□□□□ -1.08
LIG1P18858 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 RNU6-386P-201ENST00000362650 107 ntBASIC8.33□□□□□ -1.08
LIG1P18858 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
LIG1P18858 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC8.33□□□□□ -1.08
LIG1P18858 OR51B3P-201ENST00000412287 913 ntBASIC8.33□□□□□ -1.08
LIG1P18858 RNF11P2-201ENST00000427702 440 ntBASIC8.33□□□□□ -1.08
LIG1P18858 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC8.33□□□□□ -1.08
LIG1P18858 AL731892.1-201ENST00000437364 1192 ntBASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms