Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
VMP1Q96GC9 KARSP2-201ENST00000415696 1639 ntBASIC6.68□□□□□ -1.34
VMP1Q96GC9 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.68□□□□□ -1.34
VMP1Q96GC9 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
VMP1Q96GC9 AC093297.3-201ENST00000607056 2517 ntBASIC6.68□□□□□ -1.34
VMP1Q96GC9 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
VMP1Q96GC9 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.68□□□□□ -1.34
VMP1Q96GC9 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AL391261.1-201ENST00000555712 1479 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 RNA5SP35-201ENST00000391257 129 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 OR5W1P-201ENST00000423705 938 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 MTND1P10-201ENST00000426108 832 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 OR52S1P-201ENST00000427016 937 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 NFYAP1-201ENST00000431953 972 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 RPL21P33-201ENST00000444831 484 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 NUCKS1P1-201ENST00000452067 703 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 WBP1LP1-201ENST00000460451 896 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 RPL7AP30-201ENST00000482859 796 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC074386.1-206ENST00000487102 761 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 RPL21P42-201ENST00000488408 464 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC120036.3-201ENST00000517826 292 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 RGS5-220ENST00000528689 566 ntTSL 5 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC010463.3-201ENST00000594077 500 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AL512430.4-201ENST00000603085 613 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AC092960.1-201ENST00000604762 351 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 AL117378.2-201ENST00000622916 1337 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
VMP1Q96GC9 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 EEF1A1P28-201ENST00000450915 1403 ntBASIC6.67□□□□□ -1.34
VMP1Q96GC9 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.67□□□□□ -1.34
VMP1Q96GC9 CR382285.2-201ENST00000624662 1495 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
VMP1Q96GC9 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
VMP1Q96GC9 NAMPTP1-201ENST00000440465 2514 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 NPM1P14-201ENST00000343743 866 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 RNA5SP472-201ENST00000363868 119 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 RNA5SP355-201ENST00000365317 135 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 MIR27A-201ENST00000385073 78 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 MIR152-201ENST00000385212 87 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 MIR431-201ENST00000385266 114 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
VMP1Q96GC9 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 PPIAP23-201ENST00000420099 497 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 REREP1Y-201ENST00000422655 198 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC092646.1-201ENST00000427142 901 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 REREP2Y-201ENST00000439103 200 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 RPLP0P1-201ENST00000457002 361 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 CBX5P1-201ENST00000468470 561 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC091982.1-202ENST00000473923 343 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 RN7SL797P-201ENST00000486314 297 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 RPS23-208ENST00000512493 443 ntTSL 3 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC073581.1-201ENST00000519036 575 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.66□□□□□ -1.34
VMP1Q96GC9 CCDC58P1-201ENST00000578567 430 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 MIR5095-201ENST00000578844 88 ntBASIC6.66□□□□□ -1.34
VMP1Q96GC9 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms