Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MTND4LP13-201ENST00000425022 298 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 RNF19BPX-201ENST00000426224 625 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 NDUFA5P1-201ENST00000433858 341 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC8.4□□□□□ -1.06
HMGB1P09429 RPL21P33-201ENST00000444831 484 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 SDHCP3-201ENST00000445371 506 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC8.4□□□□□ -1.06
HMGB1P09429 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC8.4□□□□□ -1.06
HMGB1P09429 RPS14P8-201ENST00000478778 369 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC026826.1-201ENST00000493002 361 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC8.4□□□□□ -1.06
HMGB1P09429 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 AP003084.1-201ENST00000524828 742 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC8.4□□□□□ -1.06
HMGB1P09429 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 AL034376.2-201ENST00000568110 573 ntTSL 2 BASIC8.4□□□□□ -1.06
HMGB1P09429 MIR4258-201ENST00000580920 91 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AL589765.5-201ENST00000596133 515 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AL136139.1-201ENST00000605568 222 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC073111.2-201ENST00000605657 1075 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC018628.1-201ENST00000624147 3819 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 AC127071.1-201ENST00000624997 712 ntBASIC8.4□□□□□ -1.06
HMGB1P09429 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC8.4□□□□□ -1.06
HMGB1P09429 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC8.4□□□□□ -1.06
HMGB1P09429 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC8.4□□□□□ -1.06
HMGB1P09429 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
HMGB1P09429 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC8.4□□□□□ -1.06
HMGB1P09429 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
HMGB1P09429 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
HMGB1P09429 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
HMGB1P09429 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
HMGB1P09429 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC8.4□□□□□ -1.07
HMGB1P09429 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
HMGB1P09429 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC8.4□□□□□ -1.07
HMGB1P09429 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC8.4□□□□□ -1.07
HMGB1P09429 AC005225.5-201ENST00000623547 2225 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
HMGB1P09429 SFTPD-AS1-201ENST00000608229 5001 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC8.39□□□□□ -1.07
HMGB1P09429 AC007842.1-201ENST00000597336 2039 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC8.39□□□□□ -1.07
HMGB1P09429 DLD-205ENST00000440410 1993 ntTSL 2 BASIC8.39□□□□□ -1.07
HMGB1P09429 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
HMGB1P09429 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 RNU4-81P-201ENST00000363561 144 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 RPS3AP5-201ENST00000389400 821 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC8.39□□□□□ -1.07
HMGB1P09429 AC008753.1-201ENST00000423096 284 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 PHBP4-201ENST00000437447 837 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 NDUFA5P8-201ENST00000449019 346 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 NSRP1-205ENST00000479218 540 ntTSL 3 BASIC8.39□□□□□ -1.07
HMGB1P09429 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC8.39□□□□□ -1.07
HMGB1P09429 RPS20-202ENST00000518875 671 ntTSL 2 BASIC8.39□□□□□ -1.07
HMGB1P09429 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HMGB1P09429 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC8.39□□□□□ -1.07
HMGB1P09429 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC8.39□□□□□ -1.07
HMGB1P09429 COX6CP16-201ENST00000603667 216 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AL139317.4-201ENST00000605879 760 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AC063962.1-201ENST00000608199 521 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AC074140.1-201ENST00000621617 208 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AC020763.5-201ENST00000623298 430 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AL049541.2-201ENST00000626377 555 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
HMGB1P09429 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.07
HMGB1P09429 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
HMGB1P09429 MTCO1P15-201ENST00000529569 1526 ntBASIC8.39□□□□□ -1.07
HMGB1P09429 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
HMGB1P09429 AL356361.1-201ENST00000400943 1459 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC8.38□□□□□ -1.07
HMGB1P09429 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC8.38□□□□□ -1.07
HMGB1P09429 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
HMGB1P09429 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC8.38□□□□□ -1.07
HMGB1P09429 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 RNA5SP172-201ENST00000365061 118 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
HMGB1P09429 YWHAZP4-201ENST00000392459 708 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 AC226101.1-201ENST00000401483 387 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 MIR1231-201ENST00000408101 92 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 RNU2-18P-201ENST00000411224 162 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC8.38□□□□□ -1.07
HMGB1P09429 AC093084.1-201ENST00000424233 687 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC8.38□□□□□ -1.07
HMGB1P09429 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
HMGB1P09429 MORF4L1P4-201ENST00000450245 976 ntBASIC8.38□□□□□ -1.07
HMGB1P09429 PGBD4P1-201ENST00000473644 407 ntBASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms