Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Gm10231-201ENSMUST00000181584 441 ntBASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Gm10175-202ENSMUST00000208752 441 ntBASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smc1aQ9CU62 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smc1aQ9CU62 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Smc1aQ9CU62 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Smc1aQ9CU62 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Smc1aQ9CU62 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Smc1aQ9CU62 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Smc1aQ9CU62 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Gm15375-201ENSMUST00000119510 849 ntBASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Gm30025-201ENSMUST00000218555 728 ntBASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Gm18025-201ENSMUST00000221733 862 ntBASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smc1aQ9CU62 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Gm21814-202ENSMUST00000203277 873 ntBASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Smc1aQ9CU62 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smc1aQ9CU62 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms