Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col28a1Q2UY11 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Mir6982-201ENSMUST00000184354 68 ntBASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Gm29791-202ENSMUST00000207888 369 ntBASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col28a1Q2UY11 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Gm13181-201ENSMUST00000120117 1069 ntBASIC16.65■□□□□ 0.26
Col28a1Q2UY11 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col28a1Q2UY11 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC16.64■□□□□ 0.26
Col28a1Q2UY11 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Gm26524-201ENSMUST00000192339 390 ntBASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms