Protein–RNA interactions for Protein: P0CX57

TY1A-A, Transposon Ty1-A Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-AP0CX57 tT(AGU)O2tT(AGU)O2 73 nt0.48□□□□□ -2.33
TY1A-AP0CX57 RPL41BYDL133C-A 78 nt0.46□□□□□ -2.34
TY1A-AP0CX57 snR161snR161 161 nt0.44□□□□□ -2.34
TY1A-AP0CX57 tA(UGC)QtA(UGC)Q 76 nt0.42□□□□□ -2.34
TY1A-AP0CX57 YOL013W-AYOL013W-A 192 nt0.41□□□□□ -2.34
TY1A-AP0CX57 tC(GCA)QtC(GCA)Q 76 nt0.35□□□□□ -2.35
TY1A-AP0CX57 YOR335W-AYOR335W-A 81 nt0.29□□□□□ -2.36
TY1A-AP0CX57 snR6snR6 112 nt0.23□□□□□ -2.37
TY1A-AP0CX57 snR58snR58 96 nt0.16□□□□□ -2.38
TY1A-AP0CX57 snR73snR73 106 nt0.05□□□□□ -2.4
TY1A-AP0CX57 CDC65tQ(CUG)M 72 nt-0.08□□□□□ -2.42
TY1A-AP0CX57 YMR315W-AYMR315W-A 108 nt-0.13□□□□□ -2.43
TY1A-AP0CX57 URB1YKL014C 5295 nt-0.2□□□□□ -2.44
TY1A-AP0CX57 YHL009W-BYHL009W-B 5409 nt-0.24□□□□□ -2.45
TY1A-AP0CX57 tT(UGU)G1tT(UGU)G1 72 nt-0.5□□□□□ -2.49
TY1A-AP0CX57 tT(UGU)G2tT(UGU)G2 72 nt-0.5□□□□□ -2.49
TY1A-AP0CX57 tT(UGU)PtT(UGU)P 72 nt-0.5□□□□□ -2.49
TY1A-AP0CX57 YOR309CYOR309C 381 nt-0.51□□□□□ -2.49
TY1A-AP0CX57 snR33snR33 183 nt-0.52□□□□□ -2.49
TY1A-AP0CX57 tP(UGG)QtP(UGG)Q 72 nt-0.56□□□□□ -2.5
TY1A-AP0CX57 YNR077CYNR077C 255 nt-0.61□□□□□ -2.51
TY1A-AP0CX57 snR87snR87 109 nt-0.63□□□□□ -2.51
TY1A-AP0CX57 YBR223W-AYBR223W-A 120 nt-0.74□□□□□ -2.53
TY1A-AP0CX57 tY(GUA)QtY(GUA)Q 84 nt-1□□□□□ -2.57
TY1A-AP0CX57 YBR126W-BYBR126W-B 144 nt-1.31□□□□□ -2.62
TY1A-AP0CX57 YOL166W-AYOL166W-A 156 nt-1.56□□□□□ -2.66
TY1A-AP0CX57 YDR543CYDR543C 300 nt-1.68□□□□□ -2.68
TY1A-AP0CX57 YJR162CYJR162C 351 nt-2.28□□□□□ -2.77
TY1A-AP0CX57 YJL136W-AYJL136W-A 84 nt-2.48□□□□□ -2.81
Retrieved 29 of 7,029 protein–RNA pairs in 2.9 ms