Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 NPL-212ENST00000614468 2376 ntTSL 5 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 AC013488.1-201ENST00000526618 1838 ntBASIC7.04□□□□□ -1.28
PCDH9Q9HC56 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
PCDH9Q9HC56 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 OR2M1P-201ENST00000318104 951 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 RN7SKP268-201ENST00000411107 316 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 MEG8-201ENST00000414488 800 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC018804.1-201ENST00000430381 618 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC114402.2-201ENST00000432760 643 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AL592114.2-201ENST00000440142 532 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 RPS7P4-201ENST00000444127 582 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 OR7E7P-201ENST00000455678 1012 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 RPS16P9-201ENST00000477220 427 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 RPL7AP30-201ENST00000482859 796 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC105391.1-201ENST00000503155 1045 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 IGHVII-51-2-201ENST00000519778 259 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC126323.4-201ENST00000566935 234 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC091932.1-201ENST00000569381 427 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC004232.1-201ENST00000571388 208 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC090774.2-201ENST00000584708 322 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC011447.2-201ENST00000592921 283 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC010333.3-201ENST00000615100 402 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AL596275.2-208ENST00000641192 594 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC025809.2-201ENST00000625085 1802 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC009120.2-204ENST00000621548 2032 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 AC022905.1-201ENST00000503430 3048 ntBASIC7.03□□□□□ -1.28
PCDH9Q9HC56 OSGEPL1-204ENST00000519810 2216 ntTSL 2 BASIC7.03□□□□□ -1.28
PCDH9Q9HC56 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
PCDH9Q9HC56 MAPK10-357ENST00000641831 2858 ntBASIC7.02□□□□□ -1.28
PCDH9Q9HC56 Z97989.1-201ENST00000531702 2421 ntBASIC7.02□□□□□ -1.28
PCDH9Q9HC56 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 AC092646.2-201ENST00000431242 2095 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 AC102941.1-201ENST00000567616 1537 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 AL162456.1-201ENST00000634535 2006 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 RNA5SP333-201ENST00000363466 118 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 RNA5SP334-201ENST00000364825 118 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 RNU1-56P-201ENST00000391303 164 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 RNA5SP231-201ENST00000410496 138 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 AC007365.2-201ENST00000428806 458 ntBASIC7.02□□□□□ -1.29
PCDH9Q9HC56 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC7.02□□□□□ -1.29
PCDH9Q9HC56 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms