Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC11.05□□□□□ -0.64
CUX1P39880 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 AOX1-202ENST00000374700 5074 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CUX1P39880 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC11.05□□□□□ -0.64
CUX1P39880 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC11.05□□□□□ -0.64
CUX1P39880 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CUX1P39880 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CUX1P39880 SNORA51.1-201ENST00000363243 140 ntBASIC11.04□□□□□ -0.64
CUX1P39880 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 RN7SKP229-201ENST00000410465 302 ntBASIC11.04□□□□□ -0.64
CUX1P39880 Z68694.1-201ENST00000413929 841 ntBASIC11.04□□□□□ -0.64
CUX1P39880 RPL12P12-201ENST00000424633 501 ntBASIC11.04□□□□□ -0.64
CUX1P39880 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC11.04□□□□□ -0.64
CUX1P39880 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CUX1P39880 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC11.04□□□□□ -0.64
CUX1P39880 RN7SL174P-201ENST00000475578 289 ntBASIC11.04□□□□□ -0.64
CUX1P39880 AC106872.4-201ENST00000510050 523 ntBASIC11.04□□□□□ -0.64
CUX1P39880 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC11.04□□□□□ -0.64
CUX1P39880 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC11.04□□□□□ -0.64
CUX1P39880 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC11.04□□□□□ -0.64
CUX1P39880 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC11.04□□□□□ -0.64
CUX1P39880 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC11.04□□□□□ -0.64
CUX1P39880 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CUX1P39880 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 SGMS1-AS1-201ENST00000443374 12400 ntTSL 4 BASIC11.04□□□□□ -0.64
CUX1P39880 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC11.04□□□□□ -0.64
CUX1P39880 SP4-201ENST00000222584 6126 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
CUX1P39880 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CUX1P39880 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC11.04□□□□□ -0.64
CUX1P39880 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC11.04□□□□□ -0.64
CUX1P39880 MRPS21P8-201ENST00000569196 235 ntBASIC11.04□□□□□ -0.64
CUX1P39880 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC11.04□□□□□ -0.64
CUX1P39880 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC11.04□□□□□ -0.64
CUX1P39880 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC11.04□□□□□ -0.64
CUX1P39880 AL354718.1-201ENST00000619764 589 ntBASIC11.04□□□□□ -0.64
CUX1P39880 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC11.04□□□□□ -0.64
CUX1P39880 AL136984.1-201ENST00000607611 1893 ntBASIC11.04□□□□□ -0.64
CUX1P39880 AC013470.2-202ENST00000635746 1895 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CUX1P39880 PIEZO2-203ENST00000503781 8259 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 ZNF200-201ENST00000396868 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC11.03□□□□□ -0.64
CUX1P39880 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC11.03□□□□□ -0.64
CUX1P39880 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
CUX1P39880 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 ZNF569-202ENST00000392149 3689 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC11.03□□□□□ -0.64
CUX1P39880 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
CUX1P39880 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
CUX1P39880 RNA5SP65-201ENST00000363166 119 ntBASIC11.03□□□□□ -0.64
CUX1P39880 MED28P4-201ENST00000433137 572 ntBASIC11.03□□□□□ -0.64
CUX1P39880 RPL23AP19-201ENST00000436229 369 ntBASIC11.03□□□□□ -0.64
CUX1P39880 OR4D12P-201ENST00000509361 911 ntBASIC11.03□□□□□ -0.64
CUX1P39880 SCARNA21.2-201ENST00000516600 166 ntBASIC11.03□□□□□ -0.64
CUX1P39880 RN7SL208P-201ENST00000577964 296 ntBASIC11.03□□□□□ -0.64
CUX1P39880 AC109309.2-201ENST00000612597 332 ntBASIC11.03□□□□□ -0.64
CUX1P39880 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
CUX1P39880 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CUX1P39880 SPATA31C2-201ENST00000324915 3777 ntBASIC11.03□□□□□ -0.64
CUX1P39880 MAGEB16-202ENST00000399987 1736 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.64
CUX1P39880 OR7E122P-202ENST00000641144 6171 ntBASIC11.02□□□□□ -0.64
CUX1P39880 FRMPD3-201ENST00000276185 7304 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.64
CUX1P39880 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
CUX1P39880 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC11.02□□□□□ -0.64
CUX1P39880 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CUX1P39880 CELF2-204ENST00000417956 8044 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
CUX1P39880 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 MTND6P12-201ENST00000428247 522 ntBASIC11.02□□□□□ -0.65
CUX1P39880 RBMY2AP-201ENST00000445405 1157 ntBASIC11.02□□□□□ -0.65
CUX1P39880 RBMY2CP-201ENST00000448575 1157 ntBASIC11.02□□□□□ -0.65
CUX1P39880 RBMY2DP-202ENST00000448881 1157 ntBASIC11.02□□□□□ -0.65
CUX1P39880 RBMY2BP-202ENST00000451071 1156 ntBASIC11.02□□□□□ -0.65
CUX1P39880 RPL12P30-201ENST00000488389 499 ntBASIC11.02□□□□□ -0.65
CUX1P39880 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 AC011352.2-201ENST00000514574 1016 ntBASIC11.02□□□□□ -0.65
CUX1P39880 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC11.02□□□□□ -0.65
CUX1P39880 MED21-206ENST00000546323 575 ntTSL 3 BASIC11.02□□□□□ -0.65
CUX1P39880 AC068305.2-201ENST00000550567 1205 ntBASIC11.02□□□□□ -0.65
CUX1P39880 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC11.02□□□□□ -0.65
CUX1P39880 AC020978.7-201ENST00000575953 1187 ntBASIC11.02□□□□□ -0.65
CUX1P39880 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC11.02□□□□□ -0.65
CUX1P39880 AC068768.2-201ENST00000602352 343 ntBASIC11.02□□□□□ -0.65
CUX1P39880 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC11.02□□□□□ -0.65
CUX1P39880 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 CORIN-202ENST00000502252 3112 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
CUX1P39880 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC11.02□□□□□ -0.65
CUX1P39880 AC093278.2-201ENST00000564956 2485 ntBASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms