Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
H2afb1S4R1E0 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
H2afb1S4R1E0 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
H2afb1S4R1E0 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
H2afb1S4R1E0 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
H2afb1S4R1E0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
H2afb1S4R1E0 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
H2afb1S4R1E0 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
H2afb1S4R1E0 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.43■■□□□ 1.02
H2afb1S4R1E0 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
H2afb1S4R1E0 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
H2afb1S4R1E0 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
H2afb1S4R1E0 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
H2afb1S4R1E0 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
H2afb1S4R1E0 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
H2afb1S4R1E0 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
H2afb1S4R1E0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
H2afb1S4R1E0 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
H2afb1S4R1E0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
H2afb1S4R1E0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.38■■□□□ 1.01
H2afb1S4R1E0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.38■■□□□ 1.01
H2afb1S4R1E0 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb1S4R1E0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb1S4R1E0 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb1S4R1E0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
H2afb1S4R1E0 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb1S4R1E0 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb1S4R1E0 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
H2afb1S4R1E0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
H2afb1S4R1E0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
H2afb1S4R1E0 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.34■■□□□ 1.01
H2afb1S4R1E0 Zfp131-205ENSMUST00000223812 663 ntBASIC21.34■■□□□ 1.01
H2afb1S4R1E0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
H2afb1S4R1E0 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
H2afb1S4R1E0 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
H2afb1S4R1E0 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.33■■□□□ 1.01
H2afb1S4R1E0 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.32■■□□□ 1
H2afb1S4R1E0 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
H2afb1S4R1E0 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
H2afb1S4R1E0 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
H2afb1S4R1E0 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
H2afb1S4R1E0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.3■■□□□ 1
H2afb1S4R1E0 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
H2afb1S4R1E0 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
H2afb1S4R1E0 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.28■■□□□ 1
H2afb1S4R1E0 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.28■■□□□ 1
H2afb1S4R1E0 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
H2afb1S4R1E0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
H2afb1S4R1E0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.25■□□□□ 0.99
H2afb1S4R1E0 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
H2afb1S4R1E0 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.25■□□□□ 0.99
H2afb1S4R1E0 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
H2afb1S4R1E0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.24■□□□□ 0.99
H2afb1S4R1E0 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.23■□□□□ 0.99
H2afb1S4R1E0 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
H2afb1S4R1E0 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
H2afb1S4R1E0 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
H2afb1S4R1E0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
H2afb1S4R1E0 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
H2afb1S4R1E0 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
H2afb1S4R1E0 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
H2afb1S4R1E0 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
H2afb1S4R1E0 Gm9397-201ENSMUST00000200125 605 ntBASIC21.2■□□□□ 0.98
H2afb1S4R1E0 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.2■□□□□ 0.98
H2afb1S4R1E0 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
H2afb1S4R1E0 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
H2afb1S4R1E0 Gm24970-201ENSMUST00000175582 82 ntBASIC21.19■□□□□ 0.98
H2afb1S4R1E0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.19■□□□□ 0.98
H2afb1S4R1E0 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
H2afb1S4R1E0 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
H2afb1S4R1E0 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
H2afb1S4R1E0 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.18■□□□□ 0.98
H2afb1S4R1E0 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
H2afb1S4R1E0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.17■□□□□ 0.98
H2afb1S4R1E0 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
H2afb1S4R1E0 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
H2afb1S4R1E0 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
H2afb1S4R1E0 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
H2afb1S4R1E0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.15■□□□□ 0.98
H2afb1S4R1E0 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
H2afb1S4R1E0 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
H2afb1S4R1E0 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
H2afb1S4R1E0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
H2afb1S4R1E0 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
H2afb1S4R1E0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
H2afb1S4R1E0 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms