Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Scn11aQ9R053 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Scn11aQ9R053 Pcf11-205ENSMUST00000208255 1720 ntBASIC29.41■■■□□ 2.3
Scn11aQ9R053 Gm11599-201ENSMUST00000118720 878 ntBASIC29.4■■■□□ 2.3
Scn11aQ9R053 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Scn11aQ9R053 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC29.39■■■□□ 2.3
Scn11aQ9R053 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Scn11aQ9R053 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC29.39■■■□□ 2.29
Scn11aQ9R053 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Scn11aQ9R053 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Scn11aQ9R053 Cap2-205ENSMUST00000225824 1634 ntBASIC29.37■■■□□ 2.29
Scn11aQ9R053 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Scn11aQ9R053 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
Scn11aQ9R053 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Scn11aQ9R053 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Scn11aQ9R053 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.35■■■□□ 2.29
Scn11aQ9R053 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
Scn11aQ9R053 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Scn11aQ9R053 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC29.32■■■□□ 2.28
Scn11aQ9R053 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Scn11aQ9R053 AC153504.1-201ENSMUST00000218379 2290 ntBASIC29.32■■■□□ 2.28
Scn11aQ9R053 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC29.32■■■□□ 2.28
Scn11aQ9R053 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC29.31■■■□□ 2.28
Scn11aQ9R053 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
Scn11aQ9R053 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
Scn11aQ9R053 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC29.31■■■□□ 2.28
Scn11aQ9R053 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC29.3■■■□□ 2.28
Scn11aQ9R053 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC29.29■■■□□ 2.28
Scn11aQ9R053 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Scn11aQ9R053 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Scn11aQ9R053 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
Scn11aQ9R053 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
Scn11aQ9R053 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Scn11aQ9R053 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Scn11aQ9R053 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
Scn11aQ9R053 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
Scn11aQ9R053 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC29.24■■■□□ 2.27
Scn11aQ9R053 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Scn11aQ9R053 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Scn11aQ9R053 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Scn11aQ9R053 Zxda-201ENSMUST00000117281 2621 ntBASIC29.23■■■□□ 2.27
Scn11aQ9R053 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Scn11aQ9R053 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Scn11aQ9R053 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29.22■■■□□ 2.27
Scn11aQ9R053 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
Scn11aQ9R053 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Scn11aQ9R053 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Scn11aQ9R053 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC29.2■■■□□ 2.26
Scn11aQ9R053 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
Scn11aQ9R053 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Scn11aQ9R053 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
Scn11aQ9R053 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Scn11aQ9R053 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Scn11aQ9R053 AC131739.1-201ENSMUST00000221692 1245 ntBASIC29.16■■■□□ 2.26
Scn11aQ9R053 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC29.16■■■□□ 2.26
Scn11aQ9R053 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Scn11aQ9R053 Particl-201ENSMUST00000205370 1560 ntBASIC29.16■■■□□ 2.26
Scn11aQ9R053 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Scn11aQ9R053 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
Scn11aQ9R053 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC29.14■■■□□ 2.26
Scn11aQ9R053 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
Scn11aQ9R053 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Scn11aQ9R053 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Scn11aQ9R053 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Scn11aQ9R053 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Scn11aQ9R053 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
Scn11aQ9R053 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Scn11aQ9R053 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
Scn11aQ9R053 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Scn11aQ9R053 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC29.11■■■□□ 2.25
Scn11aQ9R053 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.09■■■□□ 2.25
Scn11aQ9R053 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
Scn11aQ9R053 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Scn11aQ9R053 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.07■■■□□ 2.24
Scn11aQ9R053 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Scn11aQ9R053 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.24
Scn11aQ9R053 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Scn11aQ9R053 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.24
Scn11aQ9R053 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Scn11aQ9R053 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Scn11aQ9R053 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
Scn11aQ9R053 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
Scn11aQ9R053 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Scn11aQ9R053 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Scn11aQ9R053 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC29.01■■■□□ 2.23
Scn11aQ9R053 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Scn11aQ9R053 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Scn11aQ9R053 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Scn11aQ9R053 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Scn11aQ9R053 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Scn11aQ9R053 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Scn11aQ9R053 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Scn11aQ9R053 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Scn11aQ9R053 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.96■■■□□ 2.23
Scn11aQ9R053 Gm15039-201ENSMUST00000118914 875 ntBASIC28.96■■■□□ 2.23
Scn11aQ9R053 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC28.95■■■□□ 2.22
Scn11aQ9R053 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC28.95■■■□□ 2.22
Scn11aQ9R053 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC28.93■■■□□ 2.22
Scn11aQ9R053 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
Scn11aQ9R053 AC167019.3-201ENSMUST00000228225 1266 ntBASIC28.91■■■□□ 2.22
Retrieved 100 of 76,532 protein–RNA pairs in 227.9 ms