Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
Brf1Q8CFK2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Brf1Q8CFK2 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.06■■■□□ 2.24
Brf1Q8CFK2 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.24
Brf1Q8CFK2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Brf1Q8CFK2 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC29.05■■■□□ 2.24
Brf1Q8CFK2 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Brf1Q8CFK2 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Brf1Q8CFK2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Brf1Q8CFK2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.04■■■□□ 2.24
Brf1Q8CFK2 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Brf1Q8CFK2 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC29.03■■■□□ 2.24
Brf1Q8CFK2 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Brf1Q8CFK2 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Brf1Q8CFK2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC29.02■■■□□ 2.24
Brf1Q8CFK2 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Brf1Q8CFK2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
Brf1Q8CFK2 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC29.01■■■□□ 2.23
Brf1Q8CFK2 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC29■■■□□ 2.23
Brf1Q8CFK2 Gm30023-201ENSMUST00000197970 889 ntBASIC29■■■□□ 2.23
Brf1Q8CFK2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC29■■■□□ 2.23
Brf1Q8CFK2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Brf1Q8CFK2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.99■■■□□ 2.23
Brf1Q8CFK2 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Brf1Q8CFK2 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Brf1Q8CFK2 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.97■■■□□ 2.23
Brf1Q8CFK2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Brf1Q8CFK2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.96■■■□□ 2.23
Brf1Q8CFK2 Gm42809-201ENSMUST00000198429 1138 ntBASIC28.96■■■□□ 2.23
Brf1Q8CFK2 Gm9939-201ENSMUST00000067161 1154 ntBASIC28.96■■■□□ 2.23
Brf1Q8CFK2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Brf1Q8CFK2 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.22
Brf1Q8CFK2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Brf1Q8CFK2 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Brf1Q8CFK2 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC28.94■■■□□ 2.22
Brf1Q8CFK2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Brf1Q8CFK2 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Brf1Q8CFK2 Nkain2-201ENSMUST00000092602 558 ntBASIC28.93■■■□□ 2.22
Brf1Q8CFK2 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Brf1Q8CFK2 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC28.92■■■□□ 2.22
Brf1Q8CFK2 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC28.92■■■□□ 2.22
Brf1Q8CFK2 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC28.91■■■□□ 2.22
Brf1Q8CFK2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.91■■■□□ 2.22
Brf1Q8CFK2 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC28.9■■■□□ 2.22
Brf1Q8CFK2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Brf1Q8CFK2 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
Brf1Q8CFK2 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC28.89■■■□□ 2.22
Brf1Q8CFK2 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Brf1Q8CFK2 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Brf1Q8CFK2 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28.86■■■□□ 2.21
Brf1Q8CFK2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Brf1Q8CFK2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.84■■■□□ 2.21
Brf1Q8CFK2 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Brf1Q8CFK2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Brf1Q8CFK2 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Brf1Q8CFK2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Brf1Q8CFK2 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Brf1Q8CFK2 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Brf1Q8CFK2 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Brf1Q8CFK2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.83■■■□□ 2.21
Brf1Q8CFK2 Gm6821-201ENSMUST00000107540 542 ntBASIC28.82■■■□□ 2.2
Brf1Q8CFK2 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Brf1Q8CFK2 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC28.8■■■□□ 2.2
Brf1Q8CFK2 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Brf1Q8CFK2 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
Brf1Q8CFK2 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.78■■■□□ 2.2
Brf1Q8CFK2 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Brf1Q8CFK2 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
Brf1Q8CFK2 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Brf1Q8CFK2 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Brf1Q8CFK2 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.75■■■□□ 2.19
Brf1Q8CFK2 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.74■■■□□ 2.19
Brf1Q8CFK2 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
Brf1Q8CFK2 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
Brf1Q8CFK2 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.73■■■□□ 2.19
Brf1Q8CFK2 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC28.71■■■□□ 2.19
Brf1Q8CFK2 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Brf1Q8CFK2 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Brf1Q8CFK2 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.7■■■□□ 2.18
Brf1Q8CFK2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Brf1Q8CFK2 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC28.69■■■□□ 2.18
Brf1Q8CFK2 Gm8503-201ENSMUST00000118131 455 ntBASIC28.69■■■□□ 2.18
Brf1Q8CFK2 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Brf1Q8CFK2 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Brf1Q8CFK2 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
Brf1Q8CFK2 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Brf1Q8CFK2 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28.66■■■□□ 2.18
Brf1Q8CFK2 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC28.66■■■□□ 2.18
Brf1Q8CFK2 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Brf1Q8CFK2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.65■■■□□ 2.18
Brf1Q8CFK2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Brf1Q8CFK2 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC28.64■■■□□ 2.18
Brf1Q8CFK2 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
Brf1Q8CFK2 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Retrieved 100 of 76,532 protein–RNA pairs in 111.7 ms