Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Usp40Q8BWR4 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
Usp40Q8BWR4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Usp40Q8BWR4 Pcf11-205ENSMUST00000208255 1720 ntBASIC33.7■■■□□ 2.99
Usp40Q8BWR4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
Usp40Q8BWR4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
Usp40Q8BWR4 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
Usp40Q8BWR4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC33.67■■■□□ 2.98
Usp40Q8BWR4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
Usp40Q8BWR4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
Usp40Q8BWR4 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
Usp40Q8BWR4 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
Usp40Q8BWR4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
Usp40Q8BWR4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
Usp40Q8BWR4 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Usp40Q8BWR4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC33.62■■■□□ 2.97
Usp40Q8BWR4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC33.61■■■□□ 2.97
Usp40Q8BWR4 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC33.61■■■□□ 2.97
Usp40Q8BWR4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC33.6■■■□□ 2.97
Usp40Q8BWR4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC33.59■■■□□ 2.97
Usp40Q8BWR4 Zxda-201ENSMUST00000117281 2621 ntBASIC33.59■■■□□ 2.97
Usp40Q8BWR4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Usp40Q8BWR4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC33.58■■■□□ 2.97
Usp40Q8BWR4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC33.57■■■□□ 2.96
Usp40Q8BWR4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Usp40Q8BWR4 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
Usp40Q8BWR4 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
Usp40Q8BWR4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
Usp40Q8BWR4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Usp40Q8BWR4 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC33.53■■■□□ 2.96
Usp40Q8BWR4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC33.52■■■□□ 2.96
Usp40Q8BWR4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC33.51■■■□□ 2.96
Usp40Q8BWR4 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
Usp40Q8BWR4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
Usp40Q8BWR4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Usp40Q8BWR4 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Usp40Q8BWR4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
Usp40Q8BWR4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC33.49■■■□□ 2.95
Usp40Q8BWR4 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC33.47■■■□□ 2.95
Usp40Q8BWR4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC33.47■■■□□ 2.95
Usp40Q8BWR4 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Usp40Q8BWR4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Usp40Q8BWR4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC33.46■■■□□ 2.95
Usp40Q8BWR4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC33.46■■■□□ 2.95
Usp40Q8BWR4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC33.45■■■□□ 2.95
Usp40Q8BWR4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
Usp40Q8BWR4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
Usp40Q8BWR4 Particl-201ENSMUST00000205370 1560 ntBASIC33.42■■■□□ 2.94
Usp40Q8BWR4 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
Usp40Q8BWR4 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC33.41■■■□□ 2.94
Usp40Q8BWR4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC33.4■■■□□ 2.94
Usp40Q8BWR4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC33.4■■■□□ 2.94
Usp40Q8BWR4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Usp40Q8BWR4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC33.39■■■□□ 2.94
Usp40Q8BWR4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
Usp40Q8BWR4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
Usp40Q8BWR4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC33.35■■■□□ 2.93
Usp40Q8BWR4 Gm11175-201ENSMUST00000116172 543 ntBASIC33.35■■■□□ 2.93
Usp40Q8BWR4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC33.35■■■□□ 2.93
Usp40Q8BWR4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC33.35■■■□□ 2.93
Usp40Q8BWR4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Usp40Q8BWR4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Usp40Q8BWR4 Gm43445-201ENSMUST00000198564 2091 ntBASIC33.33■■■□□ 2.93
Usp40Q8BWR4 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
Usp40Q8BWR4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Usp40Q8BWR4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC33.32■■■□□ 2.92
Usp40Q8BWR4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
Usp40Q8BWR4 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Usp40Q8BWR4 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Usp40Q8BWR4 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Usp40Q8BWR4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC33.3■■■□□ 2.92
Usp40Q8BWR4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC33.29■■■□□ 2.92
Usp40Q8BWR4 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Usp40Q8BWR4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Usp40Q8BWR4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC33.28■■■□□ 2.92
Usp40Q8BWR4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC33.27■■■□□ 2.92
Usp40Q8BWR4 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC33.26■■■□□ 2.91
Usp40Q8BWR4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
Usp40Q8BWR4 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC33.24■■■□□ 2.91
Usp40Q8BWR4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
Usp40Q8BWR4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC33.22■■■□□ 2.91
Usp40Q8BWR4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC33.22■■■□□ 2.91
Usp40Q8BWR4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
Usp40Q8BWR4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Usp40Q8BWR4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC33.19■■■□□ 2.9
Usp40Q8BWR4 Gm6311-201ENSMUST00000073790 878 ntBASIC33.19■■■□□ 2.9
Usp40Q8BWR4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC33.18■■■□□ 2.9
Usp40Q8BWR4 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Usp40Q8BWR4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC33.17■■■□□ 2.9
Usp40Q8BWR4 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Usp40Q8BWR4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Usp40Q8BWR4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Usp40Q8BWR4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC33.16■■■□□ 2.9
Usp40Q8BWR4 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC33.15■■■□□ 2.9
Usp40Q8BWR4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC33.14■■■□□ 2.9
Usp40Q8BWR4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC33.13■■■□□ 2.89
Usp40Q8BWR4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC33.13■■■□□ 2.89
Usp40Q8BWR4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
Usp40Q8BWR4 Gm9905-201ENSMUST00000065740 1845 ntBASIC33.12■■■□□ 2.89
Usp40Q8BWR4 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC33.12■■■□□ 2.89
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms