Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Cdh11P55288 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Cdh11P55288 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdh11P55288 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.55■■□□□ 1.04
Cdh11P55288 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.55■■□□□ 1.04
Cdh11P55288 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdh11P55288 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
Cdh11P55288 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Cdh11P55288 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdh11P55288 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdh11P55288 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdh11P55288 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cdh11P55288 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cdh11P55288 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Cdh11P55288 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdh11P55288 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Cdh11P55288 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdh11P55288 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cdh11P55288 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
Cdh11P55288 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.51■■□□□ 1.03
Cdh11P55288 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Cdh11P55288 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cdh11P55288 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cdh11P55288 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.49■■□□□ 1.03
Cdh11P55288 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
Cdh11P55288 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC21.48■■□□□ 1.03
Cdh11P55288 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Cdh11P55288 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.47■■□□□ 1.03
Cdh11P55288 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cdh11P55288 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Cdh11P55288 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cdh11P55288 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cdh11P55288 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.44■■□□□ 1.02
Cdh11P55288 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Cdh11P55288 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Cdh11P55288 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cdh11P55288 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Cdh11P55288 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Cdh11P55288 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
Cdh11P55288 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cdh11P55288 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cdh11P55288 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cdh11P55288 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cdh11P55288 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Cdh11P55288 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Cdh11P55288 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cdh11P55288 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Cdh11P55288 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.39■■□□□ 1.01
Cdh11P55288 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cdh11P55288 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cdh11P55288 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Cdh11P55288 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cdh11P55288 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.37■■□□□ 1.01
Cdh11P55288 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.37■■□□□ 1.01
Cdh11P55288 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
Cdh11P55288 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdh11P55288 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Cdh11P55288 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cdh11P55288 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdh11P55288 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdh11P55288 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cdh11P55288 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.34■■□□□ 1.01
Cdh11P55288 Gm9939-201ENSMUST00000067161 1154 ntBASIC21.33■■□□□ 1.01
Cdh11P55288 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.33■■□□□ 1
Cdh11P55288 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cdh11P55288 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cdh11P55288 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cdh11P55288 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Cdh11P55288 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cdh11P55288 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cdh11P55288 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Cdh11P55288 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Cdh11P55288 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cdh11P55288 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cdh11P55288 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cdh11P55288 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cdh11P55288 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh11P55288 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh11P55288 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh11P55288 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cdh11P55288 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cdh11P55288 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh11P55288 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.26■□□□□ 0.99
Cdh11P55288 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh11P55288 Gm6821-201ENSMUST00000107540 542 ntBASIC21.26■□□□□ 0.99
Cdh11P55288 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh11P55288 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh11P55288 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh11P55288 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cdh11P55288 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh11P55288 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh11P55288 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh11P55288 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh11P55288 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh11P55288 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cdh11P55288 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.24■□□□□ 0.99
Cdh11P55288 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Cdh11P55288 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Cdh11P55288 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC21.24■□□□□ 0.99
Cdh11P55288 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms