Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
Trav4-3A0A0B4J1K1 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav4-3A0A0B4J1K1 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav4-3A0A0B4J1K1 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trav4-3A0A0B4J1K1 Il17rd-202ENSMUST00000223942 2186 ntBASIC16.29■□□□□ 0.2
Trav4-3A0A0B4J1K1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav4-3A0A0B4J1K1 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav4-3A0A0B4J1K1 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav4-3A0A0B4J1K1 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trav4-3A0A0B4J1K1 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trav4-3A0A0B4J1K1 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav4-3A0A0B4J1K1 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav4-3A0A0B4J1K1 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav4-3A0A0B4J1K1 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav4-3A0A0B4J1K1 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC16.25■□□□□ 0.19
Trav4-3A0A0B4J1K1 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav4-3A0A0B4J1K1 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav4-3A0A0B4J1K1 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav4-3A0A0B4J1K1 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav4-3A0A0B4J1K1 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-3A0A0B4J1K1 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-3A0A0B4J1K1 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav4-3A0A0B4J1K1 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-3A0A0B4J1K1 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav4-3A0A0B4J1K1 AC166822.3-201ENSMUST00000227394 661 ntBASIC16.21■□□□□ 0.19
Trav4-3A0A0B4J1K1 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Trav4-3A0A0B4J1K1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC16.2■□□□□ 0.18
Trav4-3A0A0B4J1K1 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-3A0A0B4J1K1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav4-3A0A0B4J1K1 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trav4-3A0A0B4J1K1 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-3A0A0B4J1K1 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav4-3A0A0B4J1K1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-3A0A0B4J1K1 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav4-3A0A0B4J1K1 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-3A0A0B4J1K1 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-3A0A0B4J1K1 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-3A0A0B4J1K1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-3A0A0B4J1K1 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav4-3A0A0B4J1K1 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Trav4-3A0A0B4J1K1 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-3A0A0B4J1K1 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trav4-3A0A0B4J1K1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-3A0A0B4J1K1 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav4-3A0A0B4J1K1 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav4-3A0A0B4J1K1 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-3A0A0B4J1K1 Pcf11-205ENSMUST00000208255 1720 ntBASIC16.14■□□□□ 0.17
Trav4-3A0A0B4J1K1 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav4-3A0A0B4J1K1 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-3A0A0B4J1K1 Gm17641-201ENSMUST00000166328 2350 ntBASIC16.13■□□□□ 0.17
Trav4-3A0A0B4J1K1 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-3A0A0B4J1K1 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-3A0A0B4J1K1 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav4-3A0A0B4J1K1 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav4-3A0A0B4J1K1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trav4-3A0A0B4J1K1 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trav4-3A0A0B4J1K1 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav4-3A0A0B4J1K1 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav4-3A0A0B4J1K1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC16.11■□□□□ 0.17
Trav4-3A0A0B4J1K1 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav4-3A0A0B4J1K1 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav4-3A0A0B4J1K1 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trav4-3A0A0B4J1K1 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav4-3A0A0B4J1K1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav4-3A0A0B4J1K1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav4-3A0A0B4J1K1 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Trav4-3A0A0B4J1K1 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav4-3A0A0B4J1K1 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Trav4-3A0A0B4J1K1 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav4-3A0A0B4J1K1 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Trav4-3A0A0B4J1K1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav4-3A0A0B4J1K1 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Trav4-3A0A0B4J1K1 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav4-3A0A0B4J1K1 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Trav4-3A0A0B4J1K1 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav4-3A0A0B4J1K1 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
Trav4-3A0A0B4J1K1 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav4-3A0A0B4J1K1 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav4-3A0A0B4J1K1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Trav4-3A0A0B4J1K1 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav4-3A0A0B4J1K1 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC16.05■□□□□ 0.16
Trav4-3A0A0B4J1K1 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav4-3A0A0B4J1K1 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav4-3A0A0B4J1K1 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav4-3A0A0B4J1K1 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trav4-3A0A0B4J1K1 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav4-3A0A0B4J1K1 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Trav4-3A0A0B4J1K1 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms