Protein–RNA interactions for Protein: A0A075B653

Trav16, T cell receptor alpha variable 16 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16A0A075B653 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav16A0A075B653 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav16A0A075B653 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Trav16A0A075B653 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav16A0A075B653 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav16A0A075B653 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav16A0A075B653 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav16A0A075B653 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
Trav16A0A075B653 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Trav16A0A075B653 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav16A0A075B653 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav16A0A075B653 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Trav16A0A075B653 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav16A0A075B653 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav16A0A075B653 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav16A0A075B653 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav16A0A075B653 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav16A0A075B653 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav16A0A075B653 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav16A0A075B653 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trav16A0A075B653 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav16A0A075B653 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav16A0A075B653 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav16A0A075B653 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav16A0A075B653 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav16A0A075B653 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav16A0A075B653 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav16A0A075B653 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trav16A0A075B653 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Trav16A0A075B653 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trav16A0A075B653 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav16A0A075B653 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
Trav16A0A075B653 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trav16A0A075B653 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav16A0A075B653 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trav16A0A075B653 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Trav16A0A075B653 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav16A0A075B653 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav16A0A075B653 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav16A0A075B653 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav16A0A075B653 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav16A0A075B653 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.18■□□□□ 0.5
Trav16A0A075B653 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav16A0A075B653 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trav16A0A075B653 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav16A0A075B653 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trav16A0A075B653 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trav16A0A075B653 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.17■□□□□ 0.5
Trav16A0A075B653 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav16A0A075B653 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav16A0A075B653 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trav16A0A075B653 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trav16A0A075B653 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.15■□□□□ 0.5
Trav16A0A075B653 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16A0A075B653 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16A0A075B653 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.15■□□□□ 0.5
Trav16A0A075B653 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16A0A075B653 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.15■□□□□ 0.5
Trav16A0A075B653 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trav16A0A075B653 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trav16A0A075B653 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trav16A0A075B653 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav16A0A075B653 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav16A0A075B653 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trav16A0A075B653 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav16A0A075B653 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav16A0A075B653 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav16A0A075B653 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav16A0A075B653 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav16A0A075B653 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16A0A075B653 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16A0A075B653 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16A0A075B653 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16A0A075B653 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Trav16A0A075B653 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav16A0A075B653 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.11■□□□□ 0.49
Trav16A0A075B653 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16A0A075B653 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16A0A075B653 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.1■□□□□ 0.49
Trav16A0A075B653 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16A0A075B653 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav16A0A075B653 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16A0A075B653 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16A0A075B653 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16A0A075B653 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav16A0A075B653 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trav16A0A075B653 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav16A0A075B653 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav16A0A075B653 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Trav16A0A075B653 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav16A0A075B653 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav16A0A075B653 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav16A0A075B653 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav16A0A075B653 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav16A0A075B653 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav16A0A075B653 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16A0A075B653 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16A0A075B653 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16A0A075B653 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav16A0A075B653 Gm26115-201ENSMUST00000175605 87 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 93.4 ms